Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS046 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN004 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_20113 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Gabija because it belongs to the same clan as family APIS005 which has seed protein. | |||||||||||||
Predicted 3D structure by alphafold2 with pTM = 0.71 Download help
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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help
Structural homologs
No homologs found in AlphaFold database
No homologs found in esmfold database
Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS046 | IMGVR_UViG_3300009034_000088|3300009034|Ga0115863_100105265 | 13 | HMM model | Member alignment |
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Host Taxa distribution
Length distribution
Homology to other families download full data without filtering help
Clan ID: CLAN004
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS068 | 3.31E-114 | 1 | 322 | 1 | 330 | - | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_7825_8844 |
| APIS083 | 3.91E-89 | 2 | 322 | 22 | 341 | - | CP067347_00056 |
| APIS071 | 2.41E-81 | 2 | 321 | 4 | 335 | - | IMGVR_UViG_3300037628_000643|3300037628|Ga0310922_0000037_90720_91751 |
| APIS005 | 6.94E-81 | 3 | 322 | 8 | 302 | Gabija | APD21271.1 |
| APIS065 | 9.28E-77 | 2 | 321 | 5 | 339 | - | KJ018209_00009 |
| APIS088 | 6.33E-51 | 2 | 321 | 5 | 301 | - | uvig_218805_40 |
| APIS057 | 3.90E-49 | 5 | 321 | 2 | 318 | - | IMGVR_UViG_3300021167_000128|3300021167|Ga0216365_13592277 |
| APIS053 | 9.53E-42 | 8 | 321 | 85 | 373 | - | IMGVR_UViG_3300014203_000236|3300014203|Ga0172378_100030802 |