Seed protein information help

APIS family ID APIS050
Inhibited defense system
CLAN ID CLAN032
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300010885_038456|3300010885|Ga0133913_1000088583
gene_page: 116 13771.23 4.0862 -10.5
Phage property
Phage Assembly id
PMID/References
PDB structures ;
Pfam domains
Phrog phrog_3972
Host taxa
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending broad-spectrum counter-defense because it belongs to the same clan as family APIS035 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.79 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

Structure homologs against by esmdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
MGYP000932118009.pdb 2 109 1 96 0.7406 0.6652
MGYP003611076310.pdb 2 108 1 94 0.6536 0.583

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS050 IMGVR_UViG_3300010885_038456|3300010885|Ga0133913_1000088583 11 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       download full data without filtering help

Clan ID: CLAN032

Hit APIS family E-Value Query Start Query End Hit Start Hit End Immune system Seed protein
APIS035 2.50E-52 1 116 17 121 broad-spectrum counter-defense YP_009790938.1
APIS075 1.63E-50 1 116 25 129 - KY083726_00051
APIS047 8.41E-49 1 116 20 123 - IMGVR_UViG_3300009183_005911|3300009183|Ga0114974_10000105111
APIS074 8.58E-48 2 116 5 105 - IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_88760_89182
APIS082 3.96E-21 1 110 1 98 - MGV-GENOME-0365202_107