Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS047 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN032 | |||||||||||||
| Seed protein property |
|
|||||||||||||
| Phage property |
|
|||||||||||||
| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_3972,phrog_16544 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending broad-spectrum counter-defense because it belongs to the same clan as family APIS035 which has seed protein. | |||||||||||||
Predicted 3D structure by alphafold2 with pTM = 0.66 Download help
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Download
help
Structural homologs
No homologs found in AlphaFold database
Structure homologs against by esmdb (html) ; download full result table
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000932118009.pdb | 28 | 129 | 1 | 96 | 0.7738 | 0.6097 |
Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS047 | IMGVR_UViG_3300009183_005911|3300009183|Ga0114974_10000105111 | 21 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
Homology to other families download full data without filtering help
Clan ID: CLAN032
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS075 | 4.73E-56 | 22 | 137 | 20 | 130 | - | KY083726_00051 |
| APIS035 | 4.40E-54 | 21 | 137 | 11 | 122 | broad-spectrum counter-defense | YP_009790938.1 |
| APIS074 | 3.06E-49 | 26 | 136 | 3 | 105 | - | IMGVR_UViG_3300042691_005779|3300042691|Ga0415385_0000706_88760_89182 |
| APIS050 | 3.56E-48 | 27 | 137 | 1 | 113 | - | IMGVR_UViG_3300010885_038456|3300010885|Ga0133913_1000088583 |
| APIS082 | 1.54E-20 | 27 | 130 | 1 | 98 | - | MGV-GENOME-0365202_107 |