| Basic Information | |
|---|---|
| Species | Volvox carteri |
| Cazyme ID | Vocar20009459m |
| Family | GT4 |
| Protein Properties | Length: 543 Molecular Weight: 59315.1 Isoelectric Point: 8.9124 |
| Chromosome | Chromosome/Scaffold: 1 Start: 5684116 End: 5688341 |
| Description | sulfoquinovosyldiacylglycerol 2 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT4 | 335 | 483 | 2.1e-37 |
| HPERPVIVYVGRLGFEKNLFFLRELLNRNPGVSLAFVGDGPARSELQATFKGTPTTFLGMLHGEDLSAAYASADIFVMPSESETLGFVVLEAMASELPVV AVRAGGIPDIICPEDSGVTGFLYEPADVDKASELIGTLAANPELRARVG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 543 Download |
| MNVIHHATAP DAASRPQRVG VLINVTGWAH TRAVRLAKVQ TAVVPSTLVL GHLATCPRLR 60 QRTRQVRTCS SQPTTPSYNL PEYGNGASTS SVSDPAASTW DTSQQPSTSG QQTRSPNAPR 120 RVCIFVEPSP FTYVSGYKNR FTTMIKYLVE AGCEVLVVTT GKGFTLPSVD SSSFCDQPET 180 FCGARVVSAL SFGCPWYLQV PLSFALSPRI WREVRDFRPE LIHCSSPGVM VFAAKFYAWL 240 LKLPIVLSYH THVPSYLPRY GIQCLVPAMW GFLRILHVTA HLTLTVSPAM VDELVANRAV 300 NDRKQVQVWK KGVDSETFHP RFRSEAMRTR LTGGHPERPV IVYVGRLGFE KNLFFLRELL 360 NRNPGVSLAF VGDGPARSEL QATFKGTPTT FLGMLHGEDL SAAYASADIF VMPSESETLG 420 FVVLEAMASE LPVVAVRAGG IPDIICPEDS GVTGFLYEPA DVDKASELIG TLAANPELRA 480 RVGARARQEV AKWDWRAATM YLLNVQYPIA MAAAVAQYGK ALGSVAQGFL DQQQQQLTPS 540 PA* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03798 | GT1_wlbH_like | 5.0e-48 | 122 | 497 | 385 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
| TIGR00032 | argG | 3.0e-50 | 146 | 501 | 369 | + argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria [Amino acid biosynthesis, Glutamate family]. | ||
| cd03801 | GT1_YqgM_like | 1.0e-59 | 121 | 507 | 396 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. | ||
| TIGR00009 | L28 | 7.0e-100 | 121 | 507 | 390 | + ribosomal protein L28. This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture and are not included [Protein synthesis, Ribosomal proteins: synthesis and modification]. | ||
| PLN02871 | PLN02871 | 0 | 64 | 526 | 463 | + UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001058670.1 | 0 | 101 | 511 | 53 | 445 | Os07g0100300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_001689662.1 | 0 | 144 | 542 | 1 | 402 | sulfolipid synthase [Chlamydomonas reinhardtii] |
| RefSeq | XP_002309122.1 | 0 | 119 | 511 | 29 | 407 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323560.1 | 0 | 119 | 511 | 24 | 402 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002459190.1 | 0 | 112 | 511 | 76 | 462 | hypothetical protein SORBIDRAFT_02g000240 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3okp_A | 0.000000000000001 | 312 | 515 | 171 | 387 | B Chain B, A Novel High Affinity Integrin Alphaiibbeta3 Receptor Antagonist That Unexpectedly Displaces Mg2+ From The Beta3 Midas |
| PDB | 3okc_A | 0.000000000000001 | 312 | 515 | 171 | 387 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' Bound To Gdp (Orthorhombic Crystal Form) |
| PDB | 3oka_B | 0.000000000000002 | 312 | 505 | 171 | 375 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
| PDB | 3oka_A | 0.000000000000002 | 312 | 505 | 171 | 375 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
| PDB | 3mbo_H | 0.000000000002 | 108 | 490 | 24 | 385 | A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound With Udp And L-Malate |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FD837175 | 265 | 116 | 380 | 0 |
| FD830378 | 240 | 248 | 487 | 0 |
| FD801641 | 226 | 1 | 226 | 0 |
| FD895035 | 200 | 1 | 200 | 0 |
| FD811856 | 198 | 1 | 198 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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