y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb03g028160.1 |
Family | GH18 |
Protein Properties | Length: 431 Molecular Weight: 48362.1 Isoelectric Point: 7.9287 |
Chromosome | Chromosome/Scaffold: 3 Start: 55917363 End: 55922918 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 106 | 421 | 5.5e-31 |
VLAYVTPWNSKGYDMAKLFSKKLTHVSPVWYDLKSDRNRLVLEGEHNFDAKWVSELQSNGSLVVPRIVLEAFPAVFLLEKKQKEKAIDLIVSECRDKGYD GIVLESWSRWAIYGVLDDQELRYMALQFLKQLGEALHSVSSQSSSRHLELIYVIPAPRMQKLNNQDFGPEDLVHLADTLDGFSLMTYDFSGPQNPGPSAP LKWVHDSLAALLSAKGSSHSSSHSQMIFLGINFYGNDFLLSRGSGGGAITGRDFVHLLEKYKPSLQWDEKSLEHFFIYSDEGVKHAVFYPTLMSLSVRLD EARNWGTGLSIWEIGQ |
Full Sequence |
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Protein Sequence Length: 431 Download |
MPPRRRDRRR PRDPSPPSSD ARAPPSASGL RLTLLVPLLL LALVLAALGF SGLLSRSPPH 60 SQTLQTTAHS VYERGLVKRD VSAREILAEH TRVSENRSQR NFPNPVLAYV TPWNSKGYDM 120 AKLFSKKLTH VSPVWYDLKS DRNRLVLEGE HNFDAKWVSE LQSNGSLVVP RIVLEAFPAV 180 FLLEKKQKEK AIDLIVSECR DKGYDGIVLE SWSRWAIYGV LDDQELRYMA LQFLKQLGEA 240 LHSVSSQSSS RHLELIYVIP APRMQKLNNQ DFGPEDLVHL ADTLDGFSLM TYDFSGPQNP 300 GPSAPLKWVH DSLAALLSAK GSSHSSSHSQ MIFLGINFYG NDFLLSRGSG GGAITGRDFV 360 HLLEKYKPSL QWDEKSLEHF FIYSDEGVKH AVFYPTLMSL SVRLDEARNW GTGLSIWEIG 420 QGLDYFFDVL * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00704 | Glyco_hydro_18 | 5.0e-9 | 106 | 421 | 343 | + Glycosyl hydrolases family 18. | ||
COG3858 | COG3858 | 2.0e-18 | 181 | 430 | 257 | + Predicted glycosyl hydrolase [General function prediction only] | ||
cd02874 | GH18_CFLE_spore_hydrolase | 2.0e-23 | 106 | 430 | 339 | + Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis. | ||
smart00636 | Glyco_18 | 1.0e-26 | 106 | 421 | 348 | + Glyco_18 domain. | ||
cd02876 | GH18_SI-CLP | 1.0e-146 | 102 | 430 | 335 | + Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG34172.1 | 0 | 15 | 430 | 15 | 430 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
GenBank | EEC71106.1 | 0 | 56 | 430 | 66 | 435 | hypothetical protein OsI_02892 [Oryza sativa Indica Group] |
GenBank | EEE55003.1 | 0 | 56 | 430 | 66 | 435 | hypothetical protein OsJ_02637 [Oryza sativa Japonica Group] |
RefSeq | NP_001130247.1 | 0 | 15 | 430 | 15 | 430 | hypothetical protein LOC100191341 [Zea mays] |
RefSeq | XP_002455966.1 | 0 | 15 | 430 | 15 | 430 | hypothetical protein SORBIDRAFT_03g028160 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3bxw_A | 0 | 40 | 430 | 7 | 393 | B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp |
PDB | 3bxw_B | 0 | 40 | 430 | 7 | 393 | B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp |