y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10001405m |
Family | GH18 |
Protein Properties | Length: 332 Molecular Weight: 37430.9 Isoelectric Point: 8.3155 |
Chromosome | Chromosome/Scaffold: 6 Start: 16190583 End: 16192790 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 133 | 299 | 8.1e-23 |
EMLRKKKLREKAINLIVTECKEMEYDGIVLESWSRWAAYGVLHDPDMRKIALQFVKQLGDALHSTTSPRNNQQHMQFMYVVGPPRSEKLQMYDCGPDDLQ FLKDSVDGFSLMTYDFSNPQNPGPNAPVKWIDLTLKLLLGSSNNMDSTLARKVLLGINFYGNDFVIS |
Full Sequence |
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Protein Sequence Length: 332 Download |
MARRRRSSAT ESLKRRKEGD ESLPQVEEPD SDRRLIAIFV IFFILIPAVS IVVYKVKFDH 60 RDLQTETSIR HKGIVKTNIS FQEILTVSAM VSQGSGLVLE GRHNVDKGWI QELRSRGNAL 120 IVPRVVLEAI PGEMLRKKKL REKAINLIVT ECKEMEYDGI VLESWSRWAA YGVLHDPDMR 180 KIALQFVKQL GDALHSTTSP RNNQQHMQFM YVVGPPRSEK LQMYDCGPDD LQFLKDSVDG 240 FSLMTYDFSN PQNPGPNAPV KWIDLTLKLL LGSSNNMDST LARKVLLGIN FYGNDFVISG 300 DRGCFGKYSE DSAEASSIFC GHTFDLHFGS K* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3858 | COG3858 | 4.0e-7 | 135 | 318 | 188 | + Predicted glycosyl hydrolase [General function prediction only] | ||
pfam00704 | Glyco_hydro_18 | 6.0e-8 | 133 | 296 | 173 | + Glycosyl hydrolases family 18. | ||
cd02874 | GH18_CFLE_spore_hydrolase | 3.0e-9 | 134 | 298 | 172 | + Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis. | ||
smart00636 | Glyco_18 | 4.0e-16 | 134 | 296 | 174 | + Glyco_18 domain. | ||
cd02876 | GH18_SI-CLP | 3.0e-81 | 92 | 303 | 217 | + Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB61039.1 | 0 | 1 | 299 | 27 | 354 | A_IG002N01.31 gene product [Arabidopsis thaliana] |
GenBank | AAB61039.1 | 0.0006 | 298 | 328 | 427 | 457 | A_IG002N01.31 gene product [Arabidopsis thaliana] |
GenBank | AAM91562.1 | 0 | 1 | 223 | 1 | 268 | unknown protein [Arabidopsis thaliana] |
EMBL | CBI40499.1 | 0 | 92 | 299 | 143 | 350 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_192013.1 | 0 | 1 | 306 | 1 | 351 | glycosyl hydrolase family 18 protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3bxw_A | 5e-22 | 101 | 301 | 125 | 311 | B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp |
PDB | 3bxw_B | 5e-22 | 101 | 301 | 125 | 311 | B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp |