y
Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G124300.1 |
Family | GH18 |
Protein Properties | Length: 436 Molecular Weight: 49816.8 Isoelectric Point: 8.7075 |
Chromosome | Chromosome/Scaffold: 08 Start: 36320965 End: 36324549 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 108 | 426 | 1.1e-30 |
VLAYITPWNSKGYEMAKRFNSKFTHLSPVWYDLKSHGNSLILEGRHNADKGWISELRMRGNALILPRIVLEAFPTELLKKKKQMDKAIDLMVTECKEMEY DGLVLESWSRWAAYGVLHNPDLRNMALKFIKQLGHTLHSVTSTRNPKQQLQLVYVVGPPHSDALQQHDFGPADLQSLSGSVDGFSLMTYDFSAPNNPGPN APLNWIRFTLRLLLGSTGNNAQRLAPKIFLGINFYGNDFILSEGSGGAGAILGRDYLSLLEKHRPQLQWEKNSGEHFFVYFDDNNVRHAVFYPSLMSIYM RLEEARFWGTGISIWEIGQ |
Full Sequence |
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Protein Sequence Length: 436 Download |
MARRRERRGE PSQDRRKERI GPETREEKLN DSDASERKLI GIFILFFIII PAVSVLVYVY 60 KYGSGTKRLE PVITERGPIK TDINFQEILT ENTNVAGNES QRNYDYPVLA YITPWNSKGY 120 EMAKRFNSKF THLSPVWYDL KSHGNSLILE GRHNADKGWI SELRMRGNAL ILPRIVLEAF 180 PTELLKKKKQ MDKAIDLMVT ECKEMEYDGL VLESWSRWAA YGVLHNPDLR NMALKFIKQL 240 GHTLHSVTST RNPKQQLQLV YVVGPPHSDA LQQHDFGPAD LQSLSGSVDG FSLMTYDFSA 300 PNNPGPNAPL NWIRFTLRLL LGSTGNNAQR LAPKIFLGIN FYGNDFILSE GSGGAGAILG 360 RDYLSLLEKH RPQLQWEKNS GEHFFVYFDD NNVRHAVFYP SLMSIYMRLE EARFWGTGIS 420 IWEIGQGLDY FFDLL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00598 | GH18_chitinase-like | 2.0e-5 | 108 | 297 | 195 | + The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are included in this alignment model. | ||
COG3858 | COG3858 | 1.0e-12 | 100 | 435 | 353 | + Predicted glycosyl hydrolase [General function prediction only] | ||
smart00636 | Glyco_18 | 1.0e-18 | 108 | 426 | 355 | + Glyco_18 domain. | ||
cd02874 | GH18_CFLE_spore_hydrolase | 2.0e-21 | 108 | 435 | 340 | + Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis. | ||
cd02876 | GH18_SI-CLP | 2.0e-143 | 104 | 435 | 337 | + Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN82499.1 | 0 | 1 | 435 | 1 | 516 | hypothetical protein [Vitis vinifera] |
EMBL | CBI40499.1 | 0 | 1 | 435 | 1 | 435 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_192013.1 | 0 | 1 | 435 | 1 | 430 | glycosyl hydrolase family 18 protein [Arabidopsis thaliana] |
RefSeq | XP_002320856.1 | 0 | 61 | 435 | 27 | 399 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523373.1 | 0 | 1 | 435 | 1 | 432 | chitinase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3bxw_A | 0 | 73 | 435 | 45 | 393 | B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp |
PDB | 3bxw_B | 0 | 73 | 435 | 45 | 393 | B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp |
PDB | 3cz8_B | 0.000002 | 271 | 413 | 163 | 296 | A Chain A, Crystal Structure Of Putative Sporulation-Specific Glycosylase Ydhd From Bacillus Subtilis |
PDB | 3cz8_A | 0.000002 | 271 | 413 | 163 | 296 | A Chain A, Crystal Structure Of Putative Sporulation-Specific Glycosylase Ydhd From Bacillus Subtilis |