y
Basic Information | |
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Species | Chlamydomonas reinhardtii |
Cazyme ID | Cre03.g200650.t1.1 |
Family | GH18 |
Protein Properties | Length: 415 Molecular Weight: 46396 Isoelectric Point: 6.2886 |
Chromosome | Chromosome/Scaffold: 3 Start: 8136928 End: 8141092 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 173 | 405 | 2.2e-28 |
VKAVGTQVVGYKLDGIVFEGWSQWVASNGMSNEQFRRAAMGTVMMLGQTLKANGDKKLYLAVPPLYPANEKAPWFAREDLEMLAEHVDGFSVMTYDYSTG IGKAGPSAPISWVRTNLLLLQKGATEDAPKLSEATHSKFLLGLNFYGWDFALAPSAKRGQGLAAVTANDLVPLLQRHQPALEWDDRTEEHSFEYTDKEGV PHAVWYPSPRSVEMRVQVAEEAKVGISIWELGQ |
Full Sequence |
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Protein Sequence Length: 415 Download |
MARGTLVGVL AAGLLLLAGV QGAAAAKRRN QRQRRDIEPR FGPVEEQIWD SGLMEKKLPF 60 ATLVEKGREY YEDATQKRFK GFVLGYVTPW NKAGYQNAVT FRRKLDAVSP VWFQIRREDG 120 QIKITGGHEY NKTWVEELKQ DGPGSSPLLV PRFIMEMDMQ EQVQVLADPT ELVKAVGTQV 180 VGYKLDGIVF EGWSQWVASN GMSNEQFRRA AMGTVMMLGQ TLKANGDKKL YLAVPPLYPA 240 NEKAPWFARE DLEMLAEHVD GFSVMTYDYS TGIGKAGPSA PISWVRTNLL LLQKGATEDA 300 PKLSEATHSK FLLGLNFYGW DFALAPSAKR GQGLAAVTAN DLVPLLQRHQ PALEWDDRTE 360 EHSFEYTDKE GVPHAVWYPS PRSVEMRVQV AEEAKVGISI WELGQGLERF FELL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00704 | Glyco_hydro_18 | 4.0e-11 | 183 | 405 | 241 | + Glycosyl hydrolases family 18. | ||
smart00636 | Glyco_18 | 1.0e-16 | 183 | 405 | 253 | + Glyco_18 domain. | ||
COG3858 | COG3858 | 4.0e-26 | 81 | 414 | 346 | + Predicted glycosyl hydrolase [General function prediction only] | ||
cd02874 | GH18_CFLE_spore_hydrolase | 3.0e-29 | 83 | 414 | 342 | + Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis. | ||
cd02876 | GH18_SI-CLP | 4.0e-148 | 79 | 414 | 340 | + Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK24365.1 | 0 | 45 | 414 | 81 | 454 | unknown [Picea sitchensis] |
EMBL | CBI40499.1 | 0 | 52 | 414 | 78 | 435 | unnamed protein product [Vitis vinifera] |
GenBank | EEE55003.1 | 0 | 47 | 414 | 75 | 435 | hypothetical protein OsJ_02637 [Oryza sativa Japonica Group] |
RefSeq | XP_001693368.1 | 0 | 1 | 414 | 1 | 414 | hypothetical protein CHLREDRAFT_190601 [Chlamydomonas reinhardtii] |
RefSeq | XP_001773378.1 | 0 | 41 | 414 | 51 | 416 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3bxw_A | 0 | 45 | 414 | 42 | 393 | B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp |
PDB | 3bxw_B | 0 | 45 | 414 | 42 | 393 | B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp |
PDB | 3cz8_B | 0.00000000002 | 164 | 403 | 88 | 308 | A Chain A, Crystal Structure Of Putative Sporulation-Specific Glycosylase Ydhd From Bacillus Subtilis |
PDB | 3cz8_A | 0.00000000002 | 164 | 403 | 88 | 308 | A Chain A, Crystal Structure Of Putative Sporulation-Specific Glycosylase Ydhd From Bacillus Subtilis |