dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS376

Inhibited defense system

CLAN ID

CLAN016

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_3300042887_002430\|3300042887\|Ga0453665_0000091_41858_42400	gene_page:	180	20822.3	5.0625	-3.5

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF25188

Phrog

phrog_1171,phrog_5311,phrog_2335,phrog_3830,phrog_2871

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending type I Thoeris because it belongs to the same clan as family APIS240 which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS376	IMGVR_UViG_3300042887_002430\|3300042887\|Ga0453665_0000091_41858_42400	4	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN016

APIS376 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	SourceDB	Pfam	Phrog
IMGVR_UViG_3300042887_002430\|3300042887\|Ga0453665_0000091_41858_42400	100.000	3.716E-125	389	1.000%	IMGVR	PF25188	phrog_1171 phrog_5311 phrog_2335 phrog_3830 phrog_2871
IMGVR_UViG_3300013233_000054\|3300013233\|Ga0172420_1000571813	44.600	1.565E-43	153	0.867%	IMGVR	PF25188	phrog_1171 phrog_5311 phrog_2335 phrog_3830 phrog_2871
IMGVR_UViG_3300013233_000045\|3300013233\|Ga0172420_100046612	44.200	5.511E-43	152	0.867%	IMGVR	PF25188	phrog_1171 phrog_5311 phrog_2335 phrog_3830 phrog_2871
IMGVR_UViG_3300022707_001484\|3300022707\|Ga0247389_1000000811	47.000	8.460E-41	145	0.894%	IMGVR	PF25188	phrog_1171 phrog_5311 phrog_2335 phrog_3830 phrog_2871