Seed protein information help

APIS family ID APIS240
Inhibited defense system type I Thoeris
CLAN ID CLAN016
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
Ga0105013_100020934
gene_page: Tad6 197 22231.1 5.0197 -5
Phage property
Phage Assembly id
IMGVR_UViG_3300007510_000004
PMID/References PMID:39855193
PDB structures ;
Pfam domains PF25188
Phrog phrog_3904,phrog_1469,phrog_1293,phrog_4747,phrog_8841
Host taxa d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus subtilis
Gene Location Start: 27685;  End: 28278;  Strand: -
Description Tad3, Tad4, and Tad6 each have a conserved loop that blocks the active site pocket and interacts with the catalytic E85 residue of the type I ThsB

Seed genomic context      Download table help

Genome accession Start End Strand Protein ID Length Molecular weight Charge Isoelectric point Function Phrog PFAM

Seed genomic context- JBrowse     

Predicted 3D structure by alphafold2 with pTM = 0.79 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS240 Ga0105013_100020934 17 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN016

APIS240 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
Ga0105013_100020934 100.000 1.107E-137 426 1.000% Bacillus subtilis NCBI PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841
IMGVR_UViG_3300007510_000004|3300007510|Ga0105013_100020934 100.000 1.107E-137 426 1.000% IMGVR PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841
IMGVR_UViG_3300019850_000189|3300019850|Ga0206071_10095772120 42.700 5.196E-48 167 0.980% IMGVR PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841
IMGVR_UViG_3300032738_000151|3300032738|Ga0335108_105483273 46.100 8.803E-47 164 0.954% IMGVR PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841
IMGVR_UViG_3300014205_000768|3300014205|Ga0172380_1000351045 42.300 2.238E-49 171 0.975% IMGVR PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841
IMGVR_UViG_3300037297_000386|3300037297|Ga0394146_0000003_119542_120132 50.500 1.049E-54 186 0.990% IMGVR PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841
IMGVR_UViG_3300005253_000117|3300005253|Ga0073583_105916225 44.700 1.651E-46 163 0.939% IMGVR PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841
IMGVR_UViG_3300023284_001041|3300023284|Ga0255798_1000021455 45.600 1.612E-52 180 0.975% IMGVR PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841
IMGVR_UViG_3300028837_003199|3300028837|Ga0309839_1000076140 38.800 2.280E-40 145 0.975% IMGVR PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841
IMGVR_UViG_3300008516_000159|3300008516|Ga0111033_1154059237 38.800 2.280E-40 145 0.975% IMGVR PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841
IMGVR_UViG_3300029911_000504|3300029911|Ga0311361_100042486 52.100 6.931E-54 184 0.944% IMGVR PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841
IMGVR_UViG_3300032231_000653|3300032231|Ga0316187_1000006654 43.600 3.453E-44 156 0.975% IMGVR PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841
IMGVR_UViG_3300009494_000119|3300009494|Ga0127413_100014314 46.000 1.089E-45 160 0.964% IMGVR PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841
IMGVR_UViG_3300025087_000036|3300025087|Ga0208957_10000182 41.000 1.095E-39 143 0.985% IMGVR PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841
IMGVR_UViG_3300035698_001762|3300035698|Ga0374944_612209_12580_13215 42.100 1.849E-41 148 0.959% IMGVR PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841
IMGVR_UViG_3300007510_000001|3300007510|Ga0105013_100007267 45.200 5.240E-45 158 0.975% IMGVR PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841
IMGVR_UViG_3300008954_002089|3300008954|Ga0115650_100592915 45.300 3.827E-45 159 0.975% IMGVR PF25188 phrog_3904 phrog_1469 phrog_1293 phrog_4747 phrog_8841