dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS375

Inhibited defense system

CLAN ID

CLAN022

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
PP816325_00034	gene_page:	322	36081.9	6.9055	2

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF01068,PF14743

Phrog

phrog_167,phrog_2206,phrog_16,phrog_310,phrog_991

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending AVAST type III because it belongs to the same clan as family APIS312 which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS375	PP816325_00034	5	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN022

APIS375 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	phage	host	SourceDB	Pfam	Phrog
IMGVR_UViG_3300042156_000119\|3300042156\|Ga0439446_0000021_7578_8486	44.900	4.482E-74	249	0.953%			IMGVR	PF01068	phrog_167 phrog_2206 phrog_16 phrog_310 phrog_991
PP816325_00034	100.000	3.815E-220	671	1.000%	Xylella phage MATE2	Xylella	INPHARED	PF01068	phrog_167 phrog_2206 phrog_16 phrog_310 phrog_991
MT161387_00035	97.000	2.594E-216	660	1.000%	Xanthomonas phage FoX7	Xanthomonas	INPHARED	PF01068	phrog_167 phrog_2206 phrog_16 phrog_310 phrog_991
IMGVR_UViG_3300037312_000428\|3300037312\|Ga0395899_0000273_50086_51057	38.300	3.520E-61	211	0.966%			IMGVR	PF01068	phrog_167 phrog_2206 phrog_16 phrog_310 phrog_991
IMGVR_UViG_3300023063_000003\|3300023063\|Ga0233335_10000298	38.800	1.437E-64	221	0.988%			IMGVR	PF01068	phrog_167 phrog_2206 phrog_16 phrog_310 phrog_991