Seed proteins |
Seed genomic context | Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS312 | |||||||||||||
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| Inhibited defense system | AVAST type III | |||||||||||||
| CLAN ID | CLAN022 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | Ojima et al., 2024 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF14743, PF01068, PF14743, PF01068 | |||||||||||||
| Phrog | phrog_167,phrog_77,phrog_991,phrog_5342,phrog_964 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli | |||||||||||||
| Gene Location | Start: 40483; End: 41397; Strand: - | |||||||||||||
| Description | It has anti-AVAST type III activity, was predicted to be a ATP-dependent DNA ligase. | |||||||||||||
Seed genomic context Download table help
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
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Seed genomic context- JBrowse
Predicted 3D structure by alphafold2 with pTM = 0.79 Download help
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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help
Structural homologs
No homologs found in AlphaFold database
No homologs found in esmfold database
Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS312 | WZK98958.1 | 260 | HMM model | Member alignment |
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Host Taxa distribution
Length distribution
