Seed protein information help

APIS family ID APIS373
Inhibited defense system Thoeris
CLAN ID CLAN001
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
Ga0116171_100188554
gene_page: SequestinG 87 9744.26 8.5047 1.5
Phage property
Phage Assembly id
IMGVR_UViG_3300009692_000337
PMID/References PMID:41785351
PDB structures ;
Pfam domains PF21825
Phrog phrog_3287,phrog_4171,phrog_6518,phrog_247,phrog_9228
Host taxa activated sludge mtagenome
Gene Location Start: 3519;  End: 3782;  Strand: +
Description Anti-Thoeris sponge protein; blocks Thoeris immune signaling, likely through sequestration of 3′cADPR.

Seed genomic context      Download table help

Genome accession Start End Strand Protein ID Length Molecular weight Charge Isoelectric point Function Phrog PFAM

Seed genomic context- JBrowse     

Predicted 3D structure by alphafold2 with pTM = 0.72 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS373 Ga0116171_100188554 3 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN001

APIS373 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300009692_000337|3300009692|Ga0116171_100188554 93.400 4.349E-52 173 1.000% IMGVR PF21825 phrog_3287 phrog_4171 phrog_6518 phrog_247 phrog_9228
IMGVR_UViG_3300020045_003163|3300020045|Ga0206662_100039553 71.600 5.340E-25 95 0.736% IMGVR PF21825 phrog_3287 phrog_4171 phrog_6518 phrog_247 phrog_9228
Ga0116171_100188554 100.000 4.349E-52 173 1.000% activated sludge mtagenome NCBI PF21825 phrog_3287 phrog_4171 phrog_6518 phrog_247 phrog_9228