Seed proteins |
Seed genomic context | Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS356 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | Thoeris | |||||||||||||
| CLAN ID | CLAN001 | |||||||||||||
| Seed protein property |
|
|||||||||||||
| Phage property |
|
|||||||||||||
| PMID/References | PMID:41785351 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF21825 | |||||||||||||
| Phrog | phrog_252,phrog_1858,phrog_9148,phrog_2729,phrog_1770 | |||||||||||||
| Host taxa | estuary metagenome | |||||||||||||
| Gene Location | Start: 81; End: 302; Strand: + | |||||||||||||
| Description | Sequestin-family antidefense protein; neutralizes Thoeris signaling molecules and allows phage escape from Thoeris defense. | |||||||||||||
Seed genomic context Download table help
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|
Seed genomic context- JBrowse
Predicted 3D structure by alphafold2 with pTM = 0.79 Download help
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Download
help
Structural homologs
No homologs found in AlphaFold database
No homologs found in esmfold database
Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS356 | Ga0453769_004768_81_302 | 35 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
