dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS352

Inhibited defense system

CLAN ID

CLAN022

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
MT345684_00059	gene_page:	313	35290.4	6.4933	0

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF01068

Phrog

phrog_1330,phrog_58,phrog_616,phrog_24,phrog_5342

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending AVAST type III because it belongs to the same clan as family APIS312 which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS352	MT345684_00059	5	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN022

APIS352 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	phage	host	SourceDB	Pfam	Phrog
IMGVR_UViG_3300025593_000008\|3300025593\|Ga0210096_10026616	52.500	2.184E-94	307	0.990%			IMGVR	PF01068	phrog_1330 phrog_58 phrog_616 phrog_24 phrog_5342
IMGVR_UViG_3300028603_001920\|3300028603\|Ga0265293_100365604	51.400	1.295E-92	302	1.000%			IMGVR	PF01068	phrog_1330 phrog_58 phrog_616 phrog_24 phrog_5342
IMGVR_UViG_3300003691_000143\|3300003691\|JT63_100205017	49.400	1.963E-87	287	1.000%			IMGVR	PF01068	phrog_1330 phrog_58 phrog_616 phrog_24 phrog_5342
IMGVR_UViG_3300013103_000482\|3300013103\|Ga0164318_1000428411	47.700	4.499E-83	274	1.000%			IMGVR	PF01068	phrog_1330 phrog_58 phrog_616 phrog_24 phrog_5342
MT345684_00059	100.000	5.993E-216	658	1.000%	Alteromonas phage vB_AcoS-R7M	Alteromonas	INPHARED	PF01068	phrog_1330 phrog_58 phrog_616 phrog_24 phrog_5342