dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS313

Inhibited defense system

CLAN ID

CLAN003

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_3300026519_000116\|3300026519\|Ga0256839_100469110	gene_page:	167	17675.9	5.244	-2.5

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF26760

Phrog

phrog_91,phrog_85,phrog_684,phrog_3141,phrog_3222

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending Type I Thoeris,Type II Thoeris because it belongs to the same clan as family APIS288,APIS359,LockinC which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS313	IMGVR_UViG_3300026519_000116\|3300026519\|Ga0256839_100469110	4	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN003

APIS313 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	SourceDB	Pfam	Phrog
IMGVR_UViG_3300026519_000116\|3300026519\|Ga0256839_100469110	100.000	1.726E-110	346	1.000%	IMGVR	PF26760	phrog_91 phrog_85 phrog_684 phrog_3141 phrog_3222
IMGVR_UViG_3300022697_000058\|3300022697\|Ga0248672_10010173	62.800	9.239E-74	240	0.982%	IMGVR	PF26760	phrog_91 phrog_85 phrog_684 phrog_3141 phrog_3222
IMGVR_UViG_3300031987_000007\|3300031987\|Ga0326338_10001651	40.400	1.078E-32	121	0.958%	IMGVR	PF26760	phrog_91 phrog_85 phrog_684 phrog_3141 phrog_3222
IMGVR_UViG_3300033553_000115\|3300033553\|Ga0371479_107663351	42.200	3.390E-34	126	0.940%	IMGVR	PF26760	phrog_91 phrog_85 phrog_684 phrog_3141 phrog_3222