dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS272

Inhibited defense system

CLAN ID

CLAN003

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_3300049729_000063\|3300049729\|Ga0495428_004288_4602_5015	gene_page:	137	15074.1	5.8884	-0.5

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF26760

Phrog

phrog_1506,phrog_314,phrog_2148,phrog_4201,phrog_8917

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending Type I Thoeris,Type II Thoeris because it belongs to the same clan as family APIS288,APIS359,LockinC which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS272	IMGVR_UViG_3300049729_000063\|3300049729\|Ga0495428_004288_4602_5015	3	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN003

APIS272 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	SourceDB	Pfam	Phrog
IMGVR_UViG_3300049729_000063\|3300049729\|Ga0495428_004288_4602_5015	100.000	5.487E-87	276	1.000%	IMGVR	PF26760	phrog_1506 phrog_314 phrog_2148 phrog_4201 phrog_8917
IMGVR_UViG_3300031577_000005\|3300031577\|Ga0316602_1000025031	48.900	3.559E-31	115	0.905%	IMGVR	PF26760	phrog_1506 phrog_314 phrog_2148 phrog_4201 phrog_8917
IMGVR_UViG_3300031673_000021\|3300031673\|Ga0307377_10000258104	44.400	8.343E-30	111	0.934%	IMGVR	PF26760	phrog_1506 phrog_314 phrog_2148 phrog_4201 phrog_8917