dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS259

Inhibited defense system

CLAN ID

CLAN007

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_3300033120_000438\|3300033120\|Ga0364481_1009813	gene_page:	217	26411.2	9.2378	12

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF25187

Phrog

phrog_454,phrog_1887,phrog_1107,phrog_2034,phrog_196

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending type III CBASS because it belongs to the same clan as family APIS369 which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS259	IMGVR_UViG_3300033120_000438\|3300033120\|Ga0364481_1009813	24	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN007

APIS259 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	host	SourceDB	Pfam	Phrog
IMGVR_UViG_3300033120_000438\|3300033120\|Ga0364481_1009813	100.000	4.201E-161	494	1.000%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300012956_000850\|3300012956\|Ga0154020_1000062025	49.200	1.922E-58	198	0.977%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300031952_000023\|3300031952\|Ga0315294_1000032823	49.700	6.153E-54	185	0.908%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300047476_000597\|3300047476\|Ga0485304_000016_65823_66587	55.000	1.643E-69	230	0.986%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300028765_000010\|3300028765\|Ga0302198_100000328	49.600	5.970E-63	211	0.982%	Pseudopelobacteraceae	IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300020049_004186\|3300020049\|Ga0206652_100225224	45.700	1.134E-59	202	0.977%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300020050_006655\|3300020050\|Ga0206642_100000772	44.900	2.633E-58	198	0.977%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300020036_002176\|3300020036\|Ga0206648_100002855	44.800	3.605E-58	198	0.977%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300020050_007778\|3300020050\|Ga0206642_100029463	49.600	8.425E-54	185	0.894%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300014205_005408\|3300014205\|Ga0172380_1000153155	45.800	8.425E-54	185	0.995%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300035698_019747\|3300035698\|Ga0374944_507751_52985_53767	43.500	2.968E-47	166	0.972%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300032285_004900\|3300032285\|Ga0335280_164420684	58.100	1.272E-76	251	0.986%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300026088_000015\|3300026088\|Ga0207641_1000022765	62.900	1.342E-83	271	0.995%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300026980_000004\|3300026980\|Ga0207829_100045229	43.000	1.584E-47	167	0.991%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300000931_000001\|3300000931\|JGI12531J12852_10000008232	43.000	1.584E-47	167	0.991%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300037067_013378\|3300037067\|Ga0378408_0000200_119027_119719	43.900	1.158E-50	176	0.991%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300042564_004316\|3300042564\|Ga0453070_0015841_3714_4523	50.400	3.027E-72	238	0.991%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300032334_001981\|3300032334\|Ga0335335_1030089242	49.200	4.663E-70	232	0.991%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300031857_016292\|3300031857\|Ga0315909_100029745	67.200	7.499E-91	292	0.986%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300003316_000047\|3300003316\|rootH1_100695961	47.600	1.043E-49	173	0.853%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300003322_000041\|3300003322\|rootL2_100485967	47.600	1.043E-49	173	0.853%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300033146_004079\|3300033146\|Ga0366841_101111712	41.800	2.400E-45	160	0.986%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300042691_040521\|3300042691\|Ga0415385_0008932_8733_9458	58.500	3.981E-78	255	0.991%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196
IMGVR_UViG_3300032334_002267\|3300032334\|Ga0335335_1098548977	58.000	9.287E-77	251	0.986%		IMGVR	PF25187	phrog_454 phrog_1887 phrog_1107 phrog_2034 phrog_196