Seed protein information help

APIS family ID APIS369
Inhibited defense system type III CBASS
CLAN ID CLAN007
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
Ga0194137_1000084820
gene_page: acb3 242 28590.7 8.4366 6.5
Phage property
Phage Assembly id
IMGVR_UViG_3300018411_000090
PMID/References PMID:39855193
PDB structures ;
Pfam domains PF25187
Phrog phrog_2,phrog_1200,phrog_6468,phrog_424,phrog_5667
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli
Gene Location Start: 17352;  End: 18080;  Strand: +
Description Acb3 encodes a conserved loop that is predicted to block the active site of CD-NTases and interact with the nucleotidyltransferase catalytic residues via hydrogen and ionic bonds. 

Seed genomic context      Download table help

Genome accession Start End Strand Protein ID Length Molecular weight Charge Isoelectric point Function Phrog PFAM

Seed genomic context- JBrowse     

Predicted 3D structure by alphafold2 with pTM = 0.72 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS369 Ga0194137_1000084820 33 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN007

APIS369 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300046779_000352|3300046779|Ga0485291_000281_3192_3938 56.300 1.409E-82 269 0.996% IMGVR PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
IMGVR_UViG_3300021131_000054|3300021131|Ga0214206_100011329 57.800 2.355E-84 274 0.996% IMGVR PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
IMGVR_UViG_3300036466_000272|3300036466|Ga0377201_000172_26967_27653 60.200 1.233E-87 284 0.996% Shewanellaceae IMGVR PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
IMGVR_UViG_3300037502_004181|3300037502|Ga0310151_0000079_71998_72684 59.500 2.871E-86 280 0.996% Shewanella IMGVR PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
IMGVR_UViG_3300012933_000388|3300012933|Ga0157211_100000561 60.200 2.166E-80 263 0.901% IMGVR PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
OR662133_00083 56.200 4.064E-80 262 1.000% Vibrio phage vB_VpaS_SD15 Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
OP595602_00021 56.500 1.154E-80 264 1.000% Vibrio phage 33Fb.4 Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
PQ564447_00106 57.500 1.029E-82 270 1.000% Vibrio phage PVA73 Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
MW451246_00096 57.500 1.409E-82 269 1.000% Vibrio phage VP11 Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
OQ680630_00022 57.200 4.962E-82 268 1.000% Vibrio phage PG288 Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
HG992588_00084 57.700 4.001E-83 271 1.000% Vibrio phage B1_1 Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
PP094284_00083 57.400 1.930E-82 269 1.000% Vibrio phage vB_ValS_R12Z Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
PP346802_00007 57.300 2.644E-82 269 1.000% Vibrio phage vB_VpaS_SD2 Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
OQ993070_00020 57.500 1.029E-82 270 1.000% Vibrio phage VPy01 Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
OK625546_00073 57.300 2.644E-82 269 1.000% Vibrio phage vB_VpS_CC6 Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
JX556418_00083 55.200 4.557E-78 256 1.000% Vibrio phage vB_VpaS_MAR10 Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
IMGVR_UViG_3300035491_000068|3300035491|Ga0376444_000002_20189_20941 69.600 1.765E-110 350 1.000% IMGVR PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
IMGVR_UViG_3300032212_000172|3300032212|Ga0316207_100036582 64.400 7.687E-96 308 0.996% IMGVR PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
Ga0194137_1000084820 100.000 9.562E-177 541 1.000% Escherichia coli NCBI PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
IMGVR_UViG_3300038859_000015|3300038859|Ga0135239_000001_12843_13508 61.600 3.622E-82 268 0.909% IMGVR PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
IMGVR_UViG_3300027320_000023|3300027320|Ga0208923_100003524 57.200 1.275E-81 267 0.996% Cryptobacteroides IMGVR PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
IMGVR_UViG_3300040856_001279|3300040856|Ga0436647_0000134_6671_7405 56.700 1.171E-77 255 0.963% IMGVR PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
PQ247121_00090 56.400 1.581E-80 263 1.000% Vibrio phage vB_VneS_S3 Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
MW451251_00084 57.100 9.310E-82 267 1.000% Vibrio phage TY21 Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
MF754116_00079 57.300 2.644E-82 269 1.000% Vibrio phage vB_VpaS_KF6 Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
MF754114_00080 57.100 6.797E-82 267 1.000% Vibrio phage vB_VpaS_KF4 Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
MG893203_00080 57.100 6.797E-82 267 1.000% Vibrio phage VP06 Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
MH599087_00022 56.500 1.154E-80 264 1.000% Vibrio phage R01 Vibrio INPHARED PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
IMGVR_UViG_3300037245_001320|3300037245|Ga0392328_0000034_48972_49709 54.800 4.174E-74 245 0.901% IMGVR PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
IMGVR_UViG_3300020175_000112|3300020175|Ga0206124_1000177720 58.600 2.600E-85 277 0.996% IMGVR PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
IMGVR_UViG_3300025890_002947|3300025890|Ga0209631_1000168720 59.200 2.096E-86 280 0.996% IMGVR PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
IMGVR_UViG_3300020401_000297|3300020401|Ga0211617_100017281 58.500 8.427E-81 264 0.921% IMGVR PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667
IMGVR_UViG_3300020248_000007|3300020248|Ga0211584_100001127 59.300 1.117E-86 281 0.967% IMGVR PF25187 phrog_2 phrog_1200 phrog_6468 phrog_424 phrog_5667