dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS253

Inhibited defense system

CLAN ID

CLAN014

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_3300008110_000073\|3300008110\|Ga0114343_1000119107	gene_page:	242	27880.4	4.5603	-10.5

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF25185

Phrog

phrog_5342,phrog_10,phrog_2335,phrog_1272,phrog_551

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending type I Thoeris because it belongs to the same clan as family APIS351 which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS253	IMGVR_UViG_3300008110_000073\|3300008110\|Ga0114343_1000119107	8	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN014

APIS253 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	SourceDB	Pfam	Phrog
IMGVR_UViG_3300008110_000073\|3300008110\|Ga0114343_1000119107	100.000	2.060E-167	514	1.000%	IMGVR	PF25185	phrog_5342 phrog_10 phrog_2335 phrog_1272 phrog_551
IMGVR_UViG_3300008114_000016\|3300008114\|Ga0114347_1000075107	99.700	9.966E-167	512	0.996%	IMGVR	PF25185	phrog_5342 phrog_10 phrog_2335 phrog_1272 phrog_551
IMGVR_UViG_3300031857_000010\|3300031857\|Ga0315909_10000016225	100.000	1.503E-167	514	0.996%	IMGVR	PF25185	phrog_5342 phrog_10 phrog_2335 phrog_1272 phrog_551
IMGVR_UViG_3300033069_001585\|3300033069\|Ga0364485_1048423	53.200	8.167E-74	244	0.992%	IMGVR	PF25185	phrog_5342 phrog_10 phrog_2335 phrog_1272 phrog_551
IMGVR_UViG_3300020037_000444\|3300020037\|Ga0206644_10015376	49.300	2.379E-65	220	0.984%	IMGVR	PF25185	phrog_5342 phrog_10 phrog_2335 phrog_1272 phrog_551
IMGVR_UViG_3300008117_000017\|3300008117\|Ga0114351_1000047140	55.000	1.875E-75	249	0.971%	IMGVR	PF25185	phrog_5342 phrog_10 phrog_2335 phrog_1272 phrog_551
IMGVR_UViG_3300023179_000089\|3300023179\|Ga0214923_1000033375	56.800	1.351E-78	258	0.967%	IMGVR	PF25185	phrog_5342 phrog_10 phrog_2335 phrog_1272 phrog_551
IMGVR_UViG_3300032050_000002\|3300032050\|Ga0315906_10000007114	55.000	1.875E-75	249	0.971%	IMGVR	PF25185	phrog_5342 phrog_10 phrog_2335 phrog_1272 phrog_551