Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS351 | |||||||||||||
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| Inhibited defense system | type I Thoeris | |||||||||||||
| CLAN ID | CLAN014 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:39855193 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF25185 | |||||||||||||
| Phrog | phrog_4197,phrog_2885,phrog_107,phrog_85,phrog_1107 | |||||||||||||
| Host taxa | d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus subtilis | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | Tad3, Tad4, and Tad6 each have a conserved loop that blocks the active site pocket and interacts with the catalytic E85 residue of the type I ThsB. | |||||||||||||
Predicted 3D structure by alphafold2 with pTM = 0.75 Download help
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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help
Structural homologs
No homologs found in AlphaFold database
No homologs found in esmfold database
Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS351 | Ga0172379_1000020175 | 82 | HMM model | Member alignment |
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Host Taxa distribution
Length distribution
