dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS248

Inhibited defense system

CLAN ID

CLAN003

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_3300027819_000011\|3300027819\|Ga0209514_1000065225	gene_page:	118	12724.6	9.7043	6.5

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF26760

Phrog

phrog_1802,phrog_4211,phrog_1698,phrog_2013,phrog_3964

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending Type I Thoeris,Type II Thoeris because it belongs to the same clan as family APIS288,APIS359,LockinC which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS248	IMGVR_UViG_3300027819_000011\|3300027819\|Ga0209514_1000065225	13	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN003

APIS248 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	SourceDB	Pfam	Phrog
IMGVR_UViG_3300027819_000011\|3300027819\|Ga0209514_1000065225	100.000	2.820E-76	244	1.000%	IMGVR	PF26760	phrog_1802 phrog_4211 phrog_1698 phrog_2013 phrog_3964
IMGVR_UViG_3300001380_000002\|3300001380\|JGI1356J14229_1000018087	97.300	2.820E-76	244	1.000%	IMGVR	PF26760	phrog_1802 phrog_4211 phrog_1698 phrog_2013 phrog_3964
IMGVR_UViG_3300027822_000076\|3300027822\|Ga0209633_100046224	65.100	7.922E-35	125	0.805%	IMGVR	PF26760	phrog_1802 phrog_4211 phrog_1698 phrog_2013 phrog_3964
IMGVR_UViG_3300033143_001340\|3300033143\|Ga0366829_101361526	63.200	1.708E-32	118	0.788%	IMGVR	PF26760	phrog_1802 phrog_4211 phrog_1698 phrog_2013 phrog_3964
IMGVR_UViG_3300013099_000559\|3300013099\|Ga0164315_100268335	69.600	4.409E-32	117	0.695%	IMGVR	PF26760	phrog_1802 phrog_4211 phrog_1698 phrog_2013 phrog_3964
IMGVR_UViG_3300013099_000948\|3300013099\|Ga0164315_100243657	65.500	2.453E-29	109	0.695%	IMGVR	PF26760	phrog_1802 phrog_4211 phrog_1698 phrog_2013 phrog_3964
IMGVR_UViG_3300021488_000007\|3300021488\|Ga0190305_100017216	59.600	8.049E-26	98	0.809%	IMGVR	PF26760	phrog_1802 phrog_4211 phrog_1698 phrog_2013 phrog_3964
IMGVR_UViG_3300010430_002165\|3300010430\|Ga0118733_10000775934	60.100	3.683E-30	111	0.788%	IMGVR	PF26760	phrog_1802 phrog_4211 phrog_1698 phrog_2013 phrog_3964
IMGVR_UViG_3300005264_000045\|3300005264\|Ga0073581_10027516	59.000	8.239E-22	86	0.716%	IMGVR	PF26760	phrog_1802 phrog_4211 phrog_1698 phrog_2013 phrog_3964
IMGVR_UViG_3300045391_007135\|3300045391\|Ga0438458_00001479_11156_11446	70.100	7.240E-34	122	0.720%	IMGVR	PF26760	phrog_1802 phrog_4211 phrog_1698 phrog_2013 phrog_3964
IMGVR_UViG_3300035039_000082\|3300035039\|Ga0376513_000035_78273_78578	72.800	2.556E-40	141	0.788%	IMGVR	PF26760	phrog_1802 phrog_4211 phrog_1698 phrog_2013 phrog_3964
IMGVR_UViG_3300001580_000031\|3300001580\|Draft_1000048142	71.300	1.084E-41	145	0.788%	IMGVR	PF26760	phrog_1802 phrog_4211 phrog_1698 phrog_2013 phrog_3964
IMGVR_UViG_3300022851_001041\|3300022851\|Ga0222691_10022327	65.000	7.240E-34	122	0.788%	IMGVR	PF26760	phrog_1802 phrog_4211 phrog_1698 phrog_2013 phrog_3964