Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS246 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN003 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF26760 | |||||||||||||
| Phrog | phrog_1775,phrog_6102,phrog_2979,phrog_7158,phrog_5555 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Type I Thoeris,Type II Thoeris because it belongs to the same clan as family APIS288,APIS359,LockinC which has seed protein. | |||||||||||||
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS246 | IMGVR_UViG_3300035676_000130|3300035676|Ga0316623_00001351_5430_5846 | 4 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
Family members, sources, and their hosts help
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300035676_000130|3300035676|Ga0316623_00001351_5430_5846 | 100.000 | 2.233E-87 | 277 | 1.000% | IMGVR | PF26760 | phrog_1775 phrog_6102 phrog_2979 phrog_7158 phrog_5555 | ||
| IMGVR_UViG_3300047476_000398|3300047476|Ga0485304_001599_3050_3421 | 90.000 | 5.110E-72 | 233 | 0.891% | IMGVR | PF26760 | phrog_1775 phrog_6102 phrog_2979 phrog_7158 phrog_5555 | ||
| IMGVR_UViG_3300047480_000277|3300047480|Ga0485312_000710_10784_11155 | 90.900 | 5.603E-73 | 236 | 0.891% | IMGVR | PF26760 | phrog_1775 phrog_6102 phrog_2979 phrog_7158 phrog_5555 | ||
| IMGVR_UViG_3300032295_001534|3300032295|Ga0335302_104666950 | 91.400 | 1.584E-73 | 237 | 0.891% | IMGVR | PF26760 | phrog_1775 phrog_6102 phrog_2979 phrog_7158 phrog_5555 |