Seed proteins |
Seed genomic context | Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS245 | |||||||||||||
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| Inhibited defense system | Thoeris | |||||||||||||
| CLAN ID | CLAN001 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:41785351 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF21825 | |||||||||||||
| Phrog | phrog_4211,phrog_4120,phrog_2598,phrog_2120,phrog_10871 | |||||||||||||
| Host taxa | d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides; | |||||||||||||
| Gene Location | Start: 37340; End: 37531; Strand: - | |||||||||||||
| Description | Sequestin-family anti-defense protein; inhibits type I Thoeris signaling, most likely by binding 3′cADPR. | |||||||||||||
Seed genomic context Download table help
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
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Seed genomic context- JBrowse
Predicted 3D structure by alphafold2 with pTM = 0.79 Download help
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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help
Structural homologs
No homologs found in AlphaFold database
No homologs found in esmfold database
Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS245 | Ga0495776_136213_37340_37531 | 58 | HMM model | Member alignment |
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Host Taxa distribution
Length distribution
