dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS241

Inhibited defense system

CLAN ID

CLAN016

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_3300017829_000032\|3300017829\|Ga0189853_100003716	gene_page:	200	22502.1	4.9223	-5.5

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF25188

Phrog

phrog_4211,phrog_2335,phrog_6117,phrog_262,phrog_3830

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending type I Thoeris because it belongs to the same clan as family APIS240 which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS241	IMGVR_UViG_3300017829_000032\|3300017829\|Ga0189853_100003716	4	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN016

APIS241 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	SourceDB	Pfam	Phrog
IMGVR_UViG_3300017829_000032\|3300017829\|Ga0189853_100003716	100.000	3.503E-141	436	1.000%	IMGVR	PF25188	phrog_4211 phrog_2335 phrog_6117 phrog_262 phrog_3830
IMGVR_UViG_3300025630_000032\|3300025630\|Ga0208004_100009525	51.100	5.647E-57	193	1.000%	IMGVR	PF25188	phrog_4211 phrog_2335 phrog_6117 phrog_262 phrog_3830
IMGVR_UViG_3300006863_000038\|3300006863\|Ga0075459_100004531	51.100	5.647E-57	193	1.000%	IMGVR	PF25188	phrog_4211 phrog_2335 phrog_6117 phrog_262 phrog_3830
IMGVR_UViG_3300023284_000252\|3300023284\|Ga0255798_1000054131	55.500	7.107E-53	181	0.845%	IMGVR	PF25188	phrog_4211 phrog_2335 phrog_6117 phrog_262 phrog_3830