dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS235

Inhibited defense system

CLAN ID

CLAN007

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_3300037245_001837\|3300037245\|Ga0392328_0000081_63494_64360	gene_page:	288	34744.1	9.8602	18

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF25187

Phrog

phrog_1535,phrog_38,phrog_405,phrog_8927,phrog_1293

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending type III CBASS because it belongs to the same clan as family APIS369 which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS235	IMGVR_UViG_3300037245_001837\|3300037245\|Ga0392328_0000081_63494_64360	16	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN007

APIS235 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	SourceDB	Pfam	Phrog
IMGVR_UViG_3300037245_001837\|3300037245\|Ga0392328_0000081_63494_64360	100.000	3.178E-202	617	1.000%	IMGVR	PF25187	phrog_1535 phrog_38 phrog_405 phrog_8927 phrog_1293
IMGVR_UViG_3300020596_000023\|3300020596\|Ga0163149_1000023313	39.900	1.986E-48	173	0.861%	IMGVR	PF25187	phrog_1535 phrog_38 phrog_405 phrog_8927 phrog_1293
IMGVR_UViG_3300012988_000039\|3300012988\|Ga0164306_100001638	44.000	3.859E-59	204	0.892%	IMGVR	PF25187	phrog_1535 phrog_38 phrog_405 phrog_8927 phrog_1293
IMGVR_UViG_3300025030_000064\|3300025030\|Ga0209518_100015058	44.600	6.437E-58	200	0.861%	IMGVR	PF25187	phrog_1535 phrog_38 phrog_405 phrog_8927 phrog_1293
IMGVR_UViG_3300032285_001946\|3300032285\|Ga0335280_149766711	45.800	5.908E-60	206	0.858%	IMGVR	PF25187	phrog_1535 phrog_38 phrog_405 phrog_8927 phrog_1293
IMGVR_UViG_3300020577_008242\|3300020577\|Ga0212215_100121043	54.200	2.520E-58	201	0.674%	IMGVR	PF25187	phrog_1535 phrog_38 phrog_405 phrog_8927 phrog_1293
IMGVR_UViG_3300047557_001042\|3300047557\|Ga0485255_000454_2270_2944	46.000	9.040E-61	209	0.861%	IMGVR	PF25187	phrog_1535 phrog_38 phrog_405 phrog_8927 phrog_1293
IMGVR_UViG_3300029288_000429\|3300029288\|Ga0265297_1000238712	42.200	1.415E-53	188	0.868%	IMGVR	PF25187	phrog_1535 phrog_38 phrog_405 phrog_8927 phrog_1293
IMGVR_UViG_3300035208_002098\|3300035208\|Ga0376279_0000008_23404_24081	43.500	9.561E-56	194	0.861%	IMGVR	PF25187	phrog_1535 phrog_38 phrog_405 phrog_8927 phrog_1293
IMGVR_UViG_3300042451_001197\|3300042451\|Ga0453069_000026_66666_67379	44.700	9.861E-59	203	0.868%	IMGVR	PF25187	phrog_1535 phrog_38 phrog_405 phrog_8927 phrog_1293
IMGVR_UViG_3300003876_000014\|3300003876\|Ga0063039_100024237	46.600	7.395E-62	212	0.861%	IMGVR	PF25187	phrog_1535 phrog_38 phrog_405 phrog_8927 phrog_1293
IMGVR_UViG_3300037067_006130\|3300037067\|Ga0378408_0000532_66937_67638	42.900	2.173E-54	190	0.861%	IMGVR	PF25187	phrog_1535 phrog_38 phrog_405 phrog_8927 phrog_1293
IMGVR_UViG_3300033120_001005\|3300033120\|Ga0364481_1081876	41.200	7.264E-51	180	0.854%	IMGVR	PF25187	phrog_1535 phrog_38 phrog_405 phrog_8927 phrog_1293
IMGVR_UViG_3300025882_000008\|3300025882\|Ga0209097_1000035454	51.500	1.315E-72	243	0.868%	IMGVR	PF25187	phrog_1535 phrog_38 phrog_405 phrog_8927 phrog_1293
IMGVR_UViG_3300009783_000010\|3300009783\|Ga0116158_100007338	51.500	1.315E-72	243	0.868%	IMGVR	PF25187	phrog_1535 phrog_38 phrog_405 phrog_8927 phrog_1293
IMGVR_UViG_3300020047_004389\|3300020047\|Ga0206650_100122312	44.000	8.800E-58	200	0.875%	IMGVR	PF25187	phrog_1535 phrog_38 phrog_405 phrog_8927 phrog_1293