dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS234

Inhibited defense system

CLAN ID

CLAN003

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_3300033153_000136\|3300033153\|Ga0366824_10915457	gene_page:	158	17237.9	10.0402	7

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF26760

Phrog

phrog_4197,phrog_617,phrog_4454,phrog_177,phrog_4219

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending Type I Thoeris,Type II Thoeris because it belongs to the same clan as family APIS288,APIS359,LockinC which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS234	IMGVR_UViG_3300033153_000136\|3300033153\|Ga0366824_10915457	3	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN003

APIS234 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	host	SourceDB	Pfam	Phrog
IMGVR_UViG_3300033153_000136\|3300033153\|Ga0366824_10915457	100.000	5.019E-99	312	1.000%		IMGVR	PF26760	phrog_4197 phrog_617 phrog_4454 phrog_177 phrog_4219
IMGVR_UViG_3300028361_000091\|3300028361\|Ga0306872_10014733	78.600	2.303E-37	134	0.513%	Bacteroidaceae	IMGVR	PF26760	phrog_4197 phrog_617 phrog_4454 phrog_177 phrog_4219
IMGVR_UViG_3300012031_000001\|3300012031\|Ga0136561_100002233	78.600	2.303E-37	134	0.513%		IMGVR	PF26760	phrog_4197 phrog_617 phrog_4454 phrog_177 phrog_4219