dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS228

Inhibited defense system

CLAN ID

CLAN003

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_3300042922_000692\|3300042922\|Ga0456363_0001473_30777_31238	gene_page:	153	16801.1	4.7914	-3

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF26760

Phrog

phrog_196,phrog_2335,phrog_29,phrog_186,phrog_296

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending Type I Thoeris,Type II Thoeris because it belongs to the same clan as family APIS288,APIS359,LockinC which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS228	IMGVR_UViG_3300042922_000692\|3300042922\|Ga0456363_0001473_30777_31238	14	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN003

APIS228 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	host	SourceDB	Pfam	Phrog
IMGVR_UViG_3300042922_000692\|3300042922\|Ga0456363_0001473_30777_31238	100.000	8.454E-97	305	1.000%		IMGVR	PF26760	phrog_196 phrog_2335 phrog_29 phrog_186 phrog_296
IMGVR_UViG_3300042922_000735\|3300042922\|Ga0456363_0002870_6847_7317	53.400	6.031E-46	159	0.993%		IMGVR	PF26760	phrog_196 phrog_2335 phrog_29 phrog_186 phrog_296
IMGVR_UViG_2911017280_000001\|2911017280\|2911020000	48.700	1.204E-39	141	0.961%	Cohnella nanjingensis	IMGVR	PF26760	phrog_196 phrog_2335 phrog_29 phrog_186 phrog_296
IMGVR_UViG_3300001605_000527\|3300001605\|Draft_1000539812	79.400	4.540E-43	151	0.595%		IMGVR	PF26760	phrog_196 phrog_2335 phrog_29 phrog_186 phrog_296
IMGVR_UViG_2687453365_000003\|2687453365\|2688484273	75.100	1.998E-41	146	0.614%	Bacillus thuringiensis	IMGVR	PF26760	phrog_196 phrog_2335 phrog_29 phrog_186 phrog_296
IMGVR_UViG_2916922888_000004\|2916922888\|2916928594	76.400	2.197E-42	149	0.614%	Bacillus cereus	IMGVR	PF26760	phrog_196 phrog_2335 phrog_29 phrog_186 phrog_296
IMGVR_UViG_2916976466_000002\|2916976466\|2916979139	73.500	3.412E-40	142	0.614%	Bacillus mobilis	IMGVR	PF26760	phrog_196 phrog_2335 phrog_29 phrog_186 phrog_296
IMGVR_UViG_2521172680_000004\|2521172680\|2521924427	76.400	2.197E-42	149	0.614%	Bacillus thuringiensis	IMGVR	PF26760	phrog_196 phrog_2335 phrog_29 phrog_186 phrog_296
IMGVR_UViG_2627854191_000012\|2627854191\|2630583316	76.900	8.530E-43	150	0.614%	Bacillus bombysepticus	IMGVR	PF26760	phrog_196 phrog_2335 phrog_29 phrog_186 phrog_296
IMGVR_UViG_2925334634_000008\|2925334634\|2925338014	56.700	1.097E-48	167	0.941%	Paenibacillus sinopodophylli	IMGVR	PF26760	phrog_196 phrog_2335 phrog_29 phrog_186 phrog_296
IMGVR_UViG_2645727773_000013\|2645727773\|2646904186	75.100	1.998E-41	146	0.614%	Bacillus thuringiensis	IMGVR	PF26760	phrog_196 phrog_2335 phrog_29 phrog_186 phrog_296
IMGVR_UViG_3300040733_000015\|3300040733\|Ga0439193_000459_38836_39273	74.900	2.738E-41	145	0.614%		IMGVR	PF26760	phrog_196 phrog_2335 phrog_29 phrog_186 phrog_296
IMGVR_UViG_3300028767_000150\|3300028767\|Ga0302288_10017838	54.900	3.862E-38	136	0.771%		IMGVR	PF26760	phrog_196 phrog_2335 phrog_29 phrog_186 phrog_296
IMGVR_UViG_3300050190_000082\|3300050190\|Ga0500024_000020_31470_31889	48.500	1.363E-37	135	0.967%		IMGVR	PF26760	phrog_196 phrog_2335 phrog_29 phrog_186 phrog_296