Seed protein information help

APIS family ID APIS149
Inhibited defense system
CLAN ID CLAN056
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300025415_000127|3300025415|Ga0208868_100032919
gene_page: 270 30783.80 6.3540 -0.5
Phage property
Phage Assembly id
IMGVR_UViG_3300025415_000127
PMID/References
PDB structures ;
Pfam domains PF03837.19
Phrog phrog_12233,phrog_252,phrog_8375,phrog_10056
Host taxa ;;;;;;
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending CRISPR-Cas evasion by DNA repair because it belongs to the same clan as family APIS133 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.66 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

Structure homologs against by afdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
AF-Q32GM7-F1-model_v4 1 237 2 240 0.7335 0.7117

Structure homologs against by esmdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
MGYP001022669891.pdb 6 191 1 187 0.9296 0.7799
MGYP001042576686.pdb 1 200 8 198 0.8927 0.7664
MGYP001049722605.pdb 5 193 10 202 0.9005 0.7588
MGYP001756875362.pdb 1 199 2 209 0.8746 0.7566
MGYP004001127659.pdb 3 197 1 178 0.9158 0.7554
MGYP002717183559.pdb 1 229 5 221 0.8124 0.7534
MGYP003480204305.pdb 1 203 2 184 0.9003 0.7529
MGYP000650291425.pdb 1 195 7 182 0.9039 0.7517
MGYP000122684039.pdb 1 251 7 192 0.8773 0.7438
MGYP002325959951.pdb 1 206 6 190 0.8797 0.7424

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS149 IMGVR_UViG_3300025415_000127|3300025415|Ga0208868_100032919 4 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN056

APIS149 has no similar APIS family.