Seed protein information help

APIS family ID APIS147
Inhibited defense system
CLAN ID CLAN003
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300027857_000008|3300027857|Ga0209166_1000054018
gene_page: 179 20365.40 3.8927 -23.0
Phage property
Phage Assembly id
IMGVR_UViG_3300027857_000008
PMID/References
PDB structures ;
Pfam domains PF07275.16
Phrog
Host taxa ;;;;;;
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS003,ardu which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.85 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

Structure homologs against by afdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
AF-A0A132ZEK5-F1-model_v4 3 179 2 167 0.7797 0.7191
AF-A0A132P918-F1-model_v4 3 179 2 166 0.7728 0.7093
AF-A0A0H3GZQ3-F1-model_v4 3 178 6 168 0.755 0.6958

Structure homologs against by esmdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
MGYP000536315862.pdb 1 179 4 172 0.8759 0.8356
MGYP000349663159.pdb 1 179 2 172 0.8762 0.8344
MGYP003150784147.pdb 1 179 3 171 0.872 0.828
MGYP001435754846.pdb 1 179 1 171 0.8714 0.8246
MGYP000193280088.pdb 2 179 1 168 0.8758 0.8238
MGYP001612770019.pdb 1 179 16 189 0.8695 0.8226
MGYP003145215081.pdb 1 179 3 174 0.8515 0.8156
MGYP003642735362.pdb 2 179 5 172 0.8547 0.8129
MGYP001485142862.pdb 1 179 2 171 0.8563 0.8092
MGYP001318506529.pdb 1 179 3 173 0.8527 0.8086

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS147 IMGVR_UViG_3300027857_000008|3300027857|Ga0209166_1000054018 11 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN003

APIS147 has no similar APIS family.