Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS033 | |||||||||||||
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| Inhibited defense system | restriction-modification (RM) | |||||||||||||
| CLAN ID | CLAN030 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:7476171 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF14354.9 | |||||||||||||
| Phrog | phrog_6422,phrog_599 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin. | |||||||||||||
Predicted 3D structure by alphafold2 with pTM = 0.55 Download help
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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help
Structural homologs
No homologs found in AlphaFold database
No homologs found in esmfold database
Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS033 | YP_009168126.1 | 11 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
Homology to other families download full data without filtering help
Clan ID: CLAN030
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS040 | 3.12E-41 | 1 | 72 | 72 | 142 | - | IMGVR_UViG_2778261704_000001|2778261704|2781089226 |
Family members, sources, and their hosts help
| APIS | Contig | Range |
|---|---|---|
| APIS033 | NC_027984.1 | - |