CAZyme3D

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Entry ID

Information for CAZyme ID: QFQ12251.1

Basic Information

GenBank IDQFQ12251.1
FamilyCBM72, GH5_4
Sequence Length731
UniProt IDA0A5P8E5L1(100,100)Download
Average pLDDT?89.45
CAZy50 ID34930
CAZy50 RepYes, QFQ12251.1
Structure ClusterSC_GH5_clus105
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2133944
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusPseudoprevotella
SpeciesPseudoprevotella muciniphila

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKLRTLLICT  VAFIAQTFSA  QTFETATEAV  ANMGIGWNLG  NSLDSHKADV  TDVLKTEILR60
GQIPTKPELM  TMLKDAGFGA  VRVPVTWYPH  MANDGTVDAA  WMARVKEVVD  YVLDAGMYCI120
INVHHDGNNK  EYGSFPGHPW  MQASPANAVN  NRSRFKYLWT  QIANTFKDYD  QRLIFEGYNE180
LLDQYNSWNY  ASYNCENNYN  AVAASEAYSA  INSYAQYFVD  AVRATGGNNA  QRNLVVNTYA240
AACARGSWSK  RLTEPLKEMQ  LPTDESPNHI  IFGVHSYPRI  ANTDSLGVRS  ERSWAEIDAE300
LTTQFHNLTD  TLAAKGAPVI  ISEWGSSNVD  AAVTDYDALR  NHFLYFADDF  VKRAKAAGIP360
LFYWMGVTDR  ADRSLPVFTQ  PDLAETMLKA  HHGENYNPST  PSKDDYTDKV  YNATYLAQWG420
EVLLASFEDG  QGDYTKLTVE  FAQKTTRSRL  QLRVYYANDY  DYKSIQSVTS  VQQAFRTNGD480
KVIRVVLCYI  NADLSFKPAI  KRVYLTKSDG  TTVDLVPKNY  NNSYIELAGT  PLFNNIAVSD540
ALYTSLYYSD  RNFIVPVGTT  ARAYKVEDEQ  LVRVKTYEAG  DVIPMATGVV  IGADAACTYM600
FRHTTEAGEA  PVGSMLRGSD  TEETTTGGDT  YYMLSLNSNF  DINSAGFYYK  YDNGAPFLND660
AHKAYLAVPA  GQSLAPRYIF  SEKEDAVATG  INNAVKTPEK  DSWYTIDGRK  LNAAPTSSGI720
YIRNGKKIII  K731

Predicted 3D structure by AlphaFold2 with pLDDT = 89.45 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKLRTLLICT  VAFIAQTFSA  QTFETATEAV  ANMGIGWNLG  NSLDSHKADV  TDVLKTEILR60
GQIPTKPELM  TMLKDAGFGA  VRVPVTWYPH  MANDGTVDAA  WMARVKEVVD  YVLDAGMYCI120
INVHHDGNNK  EYGSFPGHPW  MQASPANAVN  NRSRFKYLWT  QIANTFKDYD  QRLIFEGYNE180
LLDQYNSWNY  ASYNCENNYN  AVAASEAYSA  INSYAQYFVD  AVRATGGNNA  QRNLVVNTYA240
AACARGSWSK  RLTEPLKEMQ  LPTDESPNHI  IFGVHSYPRI  ANTDSLGVRS  ERSWAEIDAE300
LTTQFHNLTD  TLAAKGAPVI  ISEWGSSNVD  AAVTDYDALR  NHFLYFADDF  VKRAKAAGIP360
LFYWMGVTDR  ADRSLPVFTQ  PDLAETMLKA  HHGENYNPST  PSKDDYTDKV  YNATYLAQWG420
EVLLASFEDG  QGDYTKLTVE  FAQKTTRSRL  QLRVYYANDY  DYKSIQSVTS  VQQAFRTNGD480
KVIRVVLCYI  NADLSFKPAI  KRVYLTKSDG  TTVDLVPKNY  NNSYIELAGT  PLFNNIAVSD540
ALYTSLYYSD  RNFIVPVGTT  ARAYKVEDEQ  LVRVKTYEAG  DVIPMATGVV  IGADAACTYM600
FRHTTEAGEA  PVGSMLRGSD  TEETTTGGDT  YYMLSLNSNF  DINSAGFYYK  YDNGAPFLND660
AHKAYLAVPA  GQSLAPRYIF  SEKEDAVATG  INNAVKTPEK  DSWYTIDGRK  LNAAPTSSGI720
YIRNGKKIII  K731

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_4(61-365)

MKLRTLLICT  VAFIAQTFSA  QTFETATEAV  ANMGIGWNLG  NSLDSHKADV  TDVLKTEILR60
GQIPTKPELM  TMLKDAGFGA  VRVPVTWYPH  MANDGTVDAA  WMARVKEVVD  YVLDAGMYCI120
INVHHDGNNK  EYGSFPGHPW  MQASPANAVN  NRSRFKYLWT  QIANTFKDYD  QRLIFEGYNE180
LLDQYNSWNY  ASYNCENNYN  AVAASEAYSA  INSYAQYFVD  AVRATGGNNA  QRNLVVNTYA240
AACARGSWSK  RLTEPLKEMQ  LPTDESPNHI  IFGVHSYPRI  ANTDSLGVRS  ERSWAEIDAE300
LTTQFHNLTD  TLAAKGAPVI  ISEWGSSNVD  AAVTDYDALR  NHFLYFADDF  VKRAKAAGIP360
LFYWMGVTDR  ADRSLPVFTQ  PDLAETMLKA  HHGENYNPST  PSKDDYTDKV  YNATYLAQWG420
EVLLASFEDG  QGDYTKLTVE  FAQKTTRSRL  QLRVYYANDY  DYKSIQSVTS  VQQAFRTNGD480
KVIRVVLCYI  NADLSFKPAI  KRVYLTKSDG  TTVDLVPKNY  NNSYIELAGT  PLFNNIAVSD540
ALYTSLYYSD  RNFIVPVGTT  ARAYKVEDEQ  LVRVKTYEAG  DVIPMATGVV  IGADAACTYM600
FRHTTEAGEA  PVGSMLRGSD  TEETTTGGDT  YYMLSLNSNF  DINSAGFYYK  YDNGAPFLND660
AHKAYLAVPA  GQSLAPRYIF  SEKEDAVATG  INNAVKTPEK  DSWYTIDGRK  LNAAPTSSGI720
YIRNGKKIII  K731

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help