CAZyme3D

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Entry ID

Information for CAZyme ID: CCQ34231.1

Basic Information

GenBank IDCCQ34231.1
FamilyGH5
Sequence Length769
UniProt IDF7PFV9(100,100)Download
Average pLDDT?72.51
CAZy50 ID30594
CAZy50 RepYes, CCQ34231.1
Structure ClusterSC_GH5_clus105
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1033806
KingdomArchaea
PhylumEuryarchaeota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloarculaceae
GenusHalorhabdus
SpeciesHalorhabdus tiamatea

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTDHDTHDGS  ESTTNDGRII  DDVSRRDVLK  AAGASAITAG  FASSIVGSAS  AVGIPTPWLH60
RDGNLIKDPD  GNQVVLRGVN  IADPARLARS  WRSKDSMGVF  EKATNTDESN  DGGWHNNILR120
VPTQPQDIGD  AGSGSIGSMP  HNDDWGPLLP  GQIDESDLET  YFSNYIDPIV  DAAEEEGLYV180
MVDYHRHFPI  FHQPQHEDDL  GDYQCGSESF  ENDIGFCGER  GVLWHSEEQA  SQLDGYTEEY240
AAELDQELQM  YWNFVAPRYN  DRSHVVYDIY  NEPTGPYAGD  WGSPTEMPST  GEEGEGNAAY300
DAEENQQYWD  MWVDRAQPWI  DTVREHAPDN  LVTIGSPRWS  QLTYWAPTNE  FDGENICYTG360
HIYAHEGMRP  LSDSFGMAAE  EVPVFLSEFG  WAEGGGRDGF  NFLEGTTSEY  ADGFESFIDE420
YPIHPICWNF  DHTWEPSFFV  HDESQDGDWV  IHDYEARPAQ  WWQEYLYENR  NNDLPGSDSD480
GGDTQAPSIP  SNLSVTDETS  SSITVSWSAA  SDSGTAGLAQ  YNVLVDGTLE  QTVSAGTTSA540
TISGLAADTS  YQIAVSAEDA  AGNTSGTTTI  TADTDAGSDD  GDTQAPSAPS  NVSIESTTQS600
SVDVTWSAST  DSGGSGLDSY  VVSVDGSPDQ  TVSAGTTSAT  VDGLDAGTTY  QIGVTAVDGA660
GNESAATSVQ  ATTSESDDDD  NGTSEGSIAT  IDARMTSAST  GDLVQFWISD  ETGNQTWITG720
LEWELGNGTS  GRGWYTDERY  QSTGTYTVTL  TATNNEGETS  TDQVEVTIS769

Predicted 3D structure by AlphaFold2 with pLDDT = 72.51 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTDHDTHDGS  ESTTNDGRII  DDVSRRDVLK  AAGASAITAG  FASSIVGSAS  AVGIPTPWLH60
RDGNLIKDPD  GNQVVLRGVN  IADPARLARS  WRSKDSMGVF  EKATNTDESN  DGGWHNNILR120
VPTQPQDIGD  AGSGSIGSMP  HNDDWGPLLP  GQIDESDLET  YFSNYIDPIV  DAAEEEGLYV180
MVDYHRHFPI  FHQPQHEDDL  GDYQCGSESF  ENDIGFCGER  GVLWHSEEQA  SQLDGYTEEY240
AAELDQELQM  YWNFVAPRYN  DRSHVVYDIY  NEPTGPYAGD  WGSPTEMPST  GEEGEGNAAY300
DAEENQQYWD  MWVDRAQPWI  DTVREHAPDN  LVTIGSPRWS  QLTYWAPTNE  FDGENICYTG360
HIYAHEGMRP  LSDSFGMAAE  EVPVFLSEFG  WAEGGGRDGF  NFLEGTTSEY  ADGFESFIDE420
YPIHPICWNF  DHTWEPSFFV  HDESQDGDWV  IHDYEARPAQ  WWQEYLYENR  NNDLPGSDSD480
GGDTQAPSIP  SNLSVTDETS  SSITVSWSAA  SDSGTAGLAQ  YNVLVDGTLE  QTVSAGTTSA540
TISGLAADTS  YQIAVSAEDA  AGNTSGTTTI  TADTDAGSDD  GDTQAPSAPS  NVSIESTTQS600
SVDVTWSAST  DSGGSGLDSY  VVSVDGSPDQ  TVSAGTTSAT  VDGLDAGTTY  QIGVTAVDGA660
GNESAATSVQ  ATTSESDDDD  NGTSEGSIAT  IDARMTSAST  GDLVQFWISD  ETGNQTWITG720
LEWELGNGTS  GRGWYTDERY  QSTGTYTVTL  TATNNEGETS  TDQVEVTIS769

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5(66-440)

MTDHDTHDGS  ESTTNDGRII  DDVSRRDVLK  AAGASAITAG  FASSIVGSAS  AVGIPTPWLH60
RDGNLIKDPD  GNQVVLRGVN  IADPARLARS  WRSKDSMGVF  EKATNTDESN  DGGWHNNILR120
VPTQPQDIGD  AGSGSIGSMP  HNDDWGPLLP  GQIDESDLET  YFSNYIDPIV  DAAEEEGLYV180
MVDYHRHFPI  FHQPQHEDDL  GDYQCGSESF  ENDIGFCGER  GVLWHSEEQA  SQLDGYTEEY240
AAELDQELQM  YWNFVAPRYN  DRSHVVYDIY  NEPTGPYAGD  WGSPTEMPST  GEEGEGNAAY300
DAEENQQYWD  MWVDRAQPWI  DTVREHAPDN  LVTIGSPRWS  QLTYWAPTNE  FDGENICYTG360
HIYAHEGMRP  LSDSFGMAAE  EVPVFLSEFG  WAEGGGRDGF  NFLEGTTSEY  ADGFESFIDE420
YPIHPICWNF  DHTWEPSFFV  HDESQDGDWV  IHDYEARPAQ  WWQEYLYENR  NNDLPGSDSD480
GGDTQAPSIP  SNLSVTDETS  SSITVSWSAA  SDSGTAGLAQ  YNVLVDGTLE  QTVSAGTTSA540
TISGLAADTS  YQIAVSAEDA  AGNTSGTTTI  TADTDAGSDD  GDTQAPSAPS  NVSIESTTQS600
SVDVTWSAST  DSGGSGLDSY  VVSVDGSPDQ  TVSAGTTSAT  VDGLDAGTTY  QIGVTAVDGA660
GNESAATSVQ  ATTSESDDDD  NGTSEGSIAT  IDARMTSAST  GDLVQFWISD  ETGNQTWITG720
LEWELGNGTS  GRGWYTDERY  QSTGTYTVTL  TATNNEGETS  TDQVEVTIS769

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help