CAZyme3D

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Entry ID

Information for CAZyme ID: ANV81171.1

Basic Information

GenBank IDANV81171.1
FamilyGT4
Sequence Length330
UniProt IDA0A1B1TFW4(100,100)Download
Average pLDDT?93.90
CAZy50 ID142029
CAZy50 RepYes, ANV81171.1
Structure ClusterSC_GT4_clus270
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1697135
KingdomArchaea
PhylumCandidatus Thermoplasmatota
ClassCandidatus Poseidoniia
Order
Family
Genus
Speciesuncultured Poseidoniia archaeon

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRRVLHVGPC  DSPGGMAKVM  QILAENPPES  WGAELLSSHI  VGNPVSKWFA  YRKAIKKFHR60
MLSSRQVSVD  LVHVHTAADW  SWRRKKRFVK  LACKFSVPCV  IHIHSGKFQS  WLSAPNSRKS120
VKIRNFINQT  NSAVVVLNND  WKKKLQPYIG  HCNVIYNPVD  PKIIPNDDVE  RDEHHLLLLG180
RNEPVKGHKF  AEKLGETLLE  SMPDLKISMT  GIEQNENNWI  DAKGWISEQE  KLDLLQRSSL240
LIVPSAFEGQ  PLAIIEALAC  GLPCLASDRI  SELPEIVETA  EFENLELWTT  KVKEILAREI300
NSDNLISASE  QFGVEKIKQK  WKVLYDSQFS  330

Predicted 3D structure by AlphaFold2 with pLDDT = 93.90 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRRVLHVGPC  DSPGGMAKVM  QILAENPPES  WGAELLSSHI  VGNPVSKWFA  YRKAIKKFHR60
MLSSRQVSVD  LVHVHTAADW  SWRRKKRFVK  LACKFSVPCV  IHIHSGKFQS  WLSAPNSRKS120
VKIRNFINQT  NSAVVVLNND  WKKKLQPYIG  HCNVIYNPVD  PKIIPNDDVE  RDEHHLLLLG180
RNEPVKGHKF  AEKLGETLLE  SMPDLKISMT  GIEQNENNWI  DAKGWISEQE  KLDLLQRSSL240
LIVPSAFEGQ  PLAIIEALAC  GLPCLASDRI  SELPEIVETA  EFENLELWTT  KVKEILAREI300
NSDNLISASE  QFGVEKIKQK  WKVLYDSQFS  330

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(172-281)

MRRVLHVGPC  DSPGGMAKVM  QILAENPPES  WGAELLSSHI  VGNPVSKWFA  YRKAIKKFHR60
MLSSRQVSVD  LVHVHTAADW  SWRRKKRFVK  LACKFSVPCV  IHIHSGKFQS  WLSAPNSRKS120
VKIRNFINQT  NSAVVVLNND  WKKKLQPYIG  HCNVIYNPVD  PKIIPNDDVE  RDEHHLLLLG180
RNEPVKGHKF  AEKLGETLLE  SMPDLKISMT  GIEQNENNWI  DAKGWISEQE  KLDLLQRSSL240
LIVPSAFEGQ  PLAIIEALAC  GLPCLASDRI  SELPEIVETA  EFENLELWTT  KVKEILAREI300
NSDNLISASE  QFGVEKIKQK  WKVLYDSQFS  330

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help