CAZyme3D

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Entry ID

Information for CAZyme ID: AKL97517.1

Basic Information

GenBank IDAKL97517.1
FamilyGT35
Sequence Length867
UniProt IDA0A0G3WI26(100,100)Download
Average pLDDT?91.53
CAZy50 ID21633
CAZy50 RepYes, AKL97517.1
Structure ClusterSC_GT35_clus64
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1408281
KingdomBacteria
PhylumElusimicrobiota
ClassEndomicrobiia
OrderEndomicrobiales
FamilyEndomicrobiaceae
GenusEndomicrobium
SpeciesEndomicrobium proavitum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNKDLFNENQ  ETFVSPNAKA  FVVVPNLPEI  LSPLLAIANN  VWWCWNSDAV  ELFRRLDRDL60
WEETYHNPKA  MLGMIKQETL  AALSEDDSFV  SHMERVKGEL  DKYMSMNTWY  HDSCSDYADM120
KFAYFSTEFA  IHESLPIYSG  GLGILSGDHL  KSASDMGLPL  VGVGLLYRYG  YFKQYLNSDG180
IQQEEYNENH  FELMPLELVK  DKKNEPLIIT  IDIPKEKISA  RVWKLQVGRV  PLYLLDTDFS240
KNSKEVREIT  GELYGGDRNM  RIRQEILLGV  GGVKLLKALN  IDPGVIHINE  GHSAFLLLEK300
MREYIEDEGL  SQAEAFQLVQ  SGCVFTTHTP  VPAGNEIFGA  DLVTRYFEPM  YKKLGFSAEQ360
FLALGSFPAK  NLKMGNPSDF  SMTILALKMT  NKANGVSRLH  ATVAREMWSG  IWPGLPRKEI420
PITHITNGIH  TNTWISYEFA  GLFDRYLGAA  WKDEPADHTI  WQRVAHIPDA  ELWRSHERRR480
ERLVSFARAR  LKHQLKRRGL  SEIMSSYADE  VLDPEALTIG  FARRFASYKR  GNLIFKDLER540
IKKIITSKEH  PVQIIIAGKA  HPQDGVGKEI  IKQIVSLAND  PELKYKVVFL  EDYDMNVAHY600
LVQGADIWLN  NPLRPEEASG  TSGMKAAVNG  ALNFSVLDGW  WCEGYNGDNG  WTIGSIDEYS660
DREYQDEVES  KAIYDTLEKE  IVPLFYARGI  DGIPRGWTKK  MKMSMQTLGP  VFNTNRMIEE720
YAKKFYITSA  LSHEKLKKNK  FEAAKKKAQW  LINVRNNWKD  VHVVKVEDNI  NGEISVFGDM780
SVTARVYIGS  LNPEDVSVQI  FSGFINSKQV  VSSQETYEMR  LVSKEGNDFI  FEGKVFADKV840
GRCGYTVRIL  PQCGGEVQYI  SELIKWQ867

Predicted 3D structure by AlphaFold2 with pLDDT = 91.53 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNKDLFNENQ  ETFVSPNAKA  FVVVPNLPEI  LSPLLAIANN  VWWCWNSDAV  ELFRRLDRDL60
WEETYHNPKA  MLGMIKQETL  AALSEDDSFV  SHMERVKGEL  DKYMSMNTWY  HDSCSDYADM120
KFAYFSTEFA  IHESLPIYSG  GLGILSGDHL  KSASDMGLPL  VGVGLLYRYG  YFKQYLNSDG180
IQQEEYNENH  FELMPLELVK  DKKNEPLIIT  IDIPKEKISA  RVWKLQVGRV  PLYLLDTDFS240
KNSKEVREIT  GELYGGDRNM  RIRQEILLGV  GGVKLLKALN  IDPGVIHINE  GHSAFLLLEK300
MREYIEDEGL  SQAEAFQLVQ  SGCVFTTHTP  VPAGNEIFGA  DLVTRYFEPM  YKKLGFSAEQ360
FLALGSFPAK  NLKMGNPSDF  SMTILALKMT  NKANGVSRLH  ATVAREMWSG  IWPGLPRKEI420
PITHITNGIH  TNTWISYEFA  GLFDRYLGAA  WKDEPADHTI  WQRVAHIPDA  ELWRSHERRR480
ERLVSFARAR  LKHQLKRRGL  SEIMSSYADE  VLDPEALTIG  FARRFASYKR  GNLIFKDLER540
IKKIITSKEH  PVQIIIAGKA  HPQDGVGKEI  IKQIVSLAND  PELKYKVVFL  EDYDMNVAHY600
LVQGADIWLN  NPLRPEEASG  TSGMKAAVNG  ALNFSVLDGW  WCEGYNGDNG  WTIGSIDEYS660
DREYQDEVES  KAIYDTLEKE  IVPLFYARGI  DGIPRGWTKK  MKMSMQTLGP  VFNTNRMIEE720
YAKKFYITSA  LSHEKLKKNK  FEAAKKKAQW  LINVRNNWKD  VHVVKVEDNI  NGEISVFGDM780
SVTARVYIGS  LNPEDVSVQI  FSGFINSKQV  VSSQETYEMR  LVSKEGNDFI  FEGKVFADKV840
GRCGYTVRIL  PQCGGEVQYI  SELIKWQ867

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT35(136-670)

MNKDLFNENQ  ETFVSPNAKA  FVVVPNLPEI  LSPLLAIANN  VWWCWNSDAV  ELFRRLDRDL60
WEETYHNPKA  MLGMIKQETL  AALSEDDSFV  SHMERVKGEL  DKYMSMNTWY  HDSCSDYADM120
KFAYFSTEFA  IHESLPIYSG  GLGILSGDHL  KSASDMGLPL  VGVGLLYRYG  YFKQYLNSDG180
IQQEEYNENH  FELMPLELVK  DKKNEPLIIT  IDIPKEKISA  RVWKLQVGRV  PLYLLDTDFS240
KNSKEVREIT  GELYGGDRNM  RIRQEILLGV  GGVKLLKALN  IDPGVIHINE  GHSAFLLLEK300
MREYIEDEGL  SQAEAFQLVQ  SGCVFTTHTP  VPAGNEIFGA  DLVTRYFEPM  YKKLGFSAEQ360
FLALGSFPAK  NLKMGNPSDF  SMTILALKMT  NKANGVSRLH  ATVAREMWSG  IWPGLPRKEI420
PITHITNGIH  TNTWISYEFA  GLFDRYLGAA  WKDEPADHTI  WQRVAHIPDA  ELWRSHERRR480
ERLVSFARAR  LKHQLKRRGL  SEIMSSYADE  VLDPEALTIG  FARRFASYKR  GNLIFKDLER540
IKKIITSKEH  PVQIIIAGKA  HPQDGVGKEI  IKQIVSLAND  PELKYKVVFL  EDYDMNVAHY600
LVQGADIWLN  NPLRPEEASG  TSGMKAAVNG  ALNFSVLDGW  WCEGYNGDNG  WTIGSIDEYS660
DREYQDEVES  KAIYDTLEKE  IVPLFYARGI  DGIPRGWTKK  MKMSMQTLGP  VFNTNRMIEE720
YAKKFYITSA  LSHEKLKKNK  FEAAKKKAQW  LINVRNNWKD  VHVVKVEDNI  NGEISVFGDM780
SVTARVYIGS  LNPEDVSVQI  FSGFINSKQV  VSSQETYEMR  LVSKEGNDFI  FEGKVFADKV840
GRCGYTVRIL  PQCGGEVQYI  SELIKWQ867

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help