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Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb01g040550.1 |
Family | AA5 |
Protein Properties | Length: 586 Molecular Weight: 62857.2 Isoelectric Point: 7.7537 |
Chromosome | Chromosome/Scaffold: 1 Start: 63903699 End: 63905456 |
Description | glyoxal oxidase-related protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA5 | 38 | 583 | 0 |
APASGAGGGRWDLLQRSIGVSAMHMQLLHNDRVIIFDRTDFGSSNLSLPDGHCRVNPRERVLPRGDCTAHSAEYDVAANAFRPLSVFTDTWCSSATVAPD GTLVQTGGWNDGFRNARTMPACGGTGDDKSCDWSEKQDVLAANRWYATNQILPDGRAFIVGGRRQFNYEFYPKAGPSDTSVVQMPFLARTKDPEENNLYP FVHLNIDGNLFIFSNNRAVLLDYKSNKIVRTYPMLGDGDPRNYPSSGSSVLLPLKPNPTEAEVLVCGGAPAGSYNSTKGGAGTFVPALTTCGRIKITDAA PAWVIETMPSPRVMGDMILLPNGAEVAIINGAADGTAGWESAKTPAYAPVVYRPDHSPGDRFEEQTATGVARLYHSSVVLLRDGRLLVGGSNPHTYYNFS NVQFPTDLSLEAFSPEYLDASNDMLRPRILDPSPTGAPSSVAYGATMTLQFSVPASARRRRGDAAGLGDVSVTMVAPSFTTHSFAMNQRLLFLDVTKNVA VRGRAGTFNASVTMPATAVLAPPGYYMVFVVNGHIPSEGIWVQIQT |
Full Sequence |
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Protein Sequence Length: 586 Download |
MELSTLLVAK TKKKTKNRAG HLAVLLLLLA CACAGGIAPA SGAGGGRWDL LQRSIGVSAM 60 HMQLLHNDRV IIFDRTDFGS SNLSLPDGHC RVNPRERVLP RGDCTAHSAE YDVAANAFRP 120 LSVFTDTWCS SATVAPDGTL VQTGGWNDGF RNARTMPACG GTGDDKSCDW SEKQDVLAAN 180 RWYATNQILP DGRAFIVGGR RQFNYEFYPK AGPSDTSVVQ MPFLARTKDP EENNLYPFVH 240 LNIDGNLFIF SNNRAVLLDY KSNKIVRTYP MLGDGDPRNY PSSGSSVLLP LKPNPTEAEV 300 LVCGGAPAGS YNSTKGGAGT FVPALTTCGR IKITDAAPAW VIETMPSPRV MGDMILLPNG 360 AEVAIINGAA DGTAGWESAK TPAYAPVVYR PDHSPGDRFE EQTATGVARL YHSSVVLLRD 420 GRLLVGGSNP HTYYNFSNVQ FPTDLSLEAF SPEYLDASND MLRPRILDPS PTGAPSSVAY 480 GATMTLQFSV PASARRRRGD AAGLGDVSVT MVAPSFTTHS FAMNQRLLFL DVTKNVAVRG 540 RAGTFNASVT MPATAVLAPP GYYMVFVVNG HIPSEGIWVQ IQTQQ* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam09118 | DUF1929 | 4.0e-27 | 469 | 581 | 114 | + Domain of unknown function (DUF1929). Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. | ||
cd02851 | E_set_GO_C | 1.0e-28 | 461 | 581 | 122 | + C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. | ||
pfam07250 | Glyoxal_oxid_N | 7.0e-120 | 60 | 305 | 249 | + Glyoxal oxidase N-terminus. This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY89314.1 | 0 | 17 | 582 | 8 | 563 | hypothetical protein OsI_10817 [Oryza sativa Indica Group] |
RefSeq | NP_001049609.1 | 0 | 17 | 582 | 8 | 564 | Os03g0258900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001149941.1 | 0 | 14 | 584 | 8 | 579 | glyoxal oxidase [Zea mays] |
RefSeq | XP_002438138.1 | 0 | 90 | 583 | 65 | 559 | hypothetical protein SORBIDRAFT_10g008655 [Sorghum bicolor] |
RefSeq | XP_002468154.1 | 0 | 1 | 585 | 1 | 585 | hypothetical protein SORBIDRAFT_01g040550 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2wq8_A | 0.0000000000002 | 126 | 569 | 247 | 646 | A Chain A, Glycan Labelling Using Engineered Variants Of Galactose Oxidase Obtained By Directed Evolution |
PDB | 2eic_A | 0.0000000000002 | 126 | 569 | 225 | 624 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
PDB | 2eib_A | 0.0000000000002 | 126 | 569 | 225 | 624 | A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant |
PDB | 1t2x_A | 0.0000000000003 | 126 | 569 | 225 | 624 | A Chain A, Glactose Oxidase C383s Mutant Identified By Directed Evolution |
PDB | 1k3i_A | 0.0000000000004 | 126 | 569 | 242 | 641 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |