y
Basic Information | |
---|---|
Species | Medicago truncatula |
Cazyme ID | Medtr8g102900.1 |
Family | AA5 |
Protein Properties | Length: 634 Molecular Weight: 70812.1 Isoelectric Point: 5.8547 |
Chromosome | Chromosome/Scaffold: 8 Start: 30082197 End: 30084466 |
Description | glyoxal oxidase-related protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA5 | 53 | 633 | 0 |
NNNNYGDNNSPLYDNGDDGNNNYGDNDAPTFKDLKPVEEDILKPVEEVAKKVDFELASIGRWDLISPDSGVSAMHINLLPTNKIIIIDALIYRVSRIKFP DGVPCVPYKELRTQEDKVDCFAHSAEYDIETNQVRPLKMIGGDPWCSSGGLAPDGTLVSTGGFMEGEKSIRYYGGGCQNCEWREYDGTLSENRWYGTQQL LPNGEFMVIGGRRSFSYEFIPQEGQKSGKPNLFPFLYETSDLDENNLYPFVHLVPDGNLFIFANNRSLLLNPTTNKVVRTFPVLPGGSRNYPASGQSALL PIDLNAETTKAEVIVCGGNLHNAFVLAEQKKIFLPALQDCNRLTVTEPNPKWDSEMMPSRRTMGDALILPNGELLFINGAQYGTSAWWDADQPNYTPVLY NPDKPKGLRFKAMMPTQIARMYHSTSAVLPNGKIWVSGSNTHETYKDNDKYPTETRVEAFSPPYLDEAFNKYRPQINQGATKKELKYGNTFETNFSVEDG AGLTANDIKVTMYAPPFTTHGFSMGQRLIILKIDELVAQEPGSYTVRMAAPPSGAIAPPGYYLLFVVHRGIPSTGTWVRIE |
Full Sequence |
---|
Protein Sequence Length: 634 Download |
MTNFYKVVFI LALLFLAVDA KHKTKKKIKK SKDHHKIFKN SIFTVPYDNG DDNNNNYGDN 60 NSPLYDNGDD GNNNYGDNDA PTFKDLKPVE EDILKPVEEV AKKVDFELAS IGRWDLISPD 120 SGVSAMHINL LPTNKIIIID ALIYRVSRIK FPDGVPCVPY KELRTQEDKV DCFAHSAEYD 180 IETNQVRPLK MIGGDPWCSS GGLAPDGTLV STGGFMEGEK SIRYYGGGCQ NCEWREYDGT 240 LSENRWYGTQ QLLPNGEFMV IGGRRSFSYE FIPQEGQKSG KPNLFPFLYE TSDLDENNLY 300 PFVHLVPDGN LFIFANNRSL LLNPTTNKVV RTFPVLPGGS RNYPASGQSA LLPIDLNAET 360 TKAEVIVCGG NLHNAFVLAE QKKIFLPALQ DCNRLTVTEP NPKWDSEMMP SRRTMGDALI 420 LPNGELLFIN GAQYGTSAWW DADQPNYTPV LYNPDKPKGL RFKAMMPTQI ARMYHSTSAV 480 LPNGKIWVSG SNTHETYKDN DKYPTETRVE AFSPPYLDEA FNKYRPQINQ GATKKELKYG 540 NTFETNFSVE DGAGLTANDI KVTMYAPPFT THGFSMGQRL IILKIDELVA QEPGSYTVRM 600 AAPPSGAIAP PGYYLLFVVH RGIPSTGTWV RIE* 660 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam09118 | DUF1929 | 3.0e-18 | 525 | 632 | 109 | + Domain of unknown function (DUF1929). Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. | ||
cd02851 | E_set_GO_C | 8.0e-19 | 521 | 632 | 113 | + C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. | ||
pfam07250 | Glyoxal_oxid_N | 1.0e-101 | 126 | 370 | 248 | + Glyoxal oxidase N-terminus. This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL84955.1 | 0 | 72 | 632 | 36 | 593 | AT5g19580/T20D1_100 [Arabidopsis thaliana] |
EMBL | CBI28031.1 | 0 | 98 | 633 | 89 | 623 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197459.1 | 0 | 72 | 632 | 36 | 593 | glyoxal oxidase-related [Arabidopsis thaliana] |
RefSeq | XP_002280698.1 | 0 | 98 | 633 | 113 | 647 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331167.1 | 0 | 112 | 633 | 89 | 609 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2eic_A | 0.00000000006 | 398 | 632 | 424 | 637 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
PDB | 2wq8_A | 0.00000000006 | 398 | 632 | 446 | 659 | A Chain A, Glycan Labelling Using Engineered Variants Of Galactose Oxidase Obtained By Directed Evolution |
PDB | 1k3i_A | 0.00000000006 | 398 | 632 | 441 | 654 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
PDB | 2eib_A | 0.00000000006 | 398 | 632 | 424 | 637 | A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant |
PDB | 2eid_A | 0.00000000006 | 398 | 632 | 424 | 637 | A Chain A, Galactose Oxidase W290g Mutant |