y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s242_81V6.1 |
Family | GT64 |
Protein Properties | Length: 769 Molecular Weight: 87076.3 Isoelectric Point: 8.0072 |
Chromosome | Chromosome/Scaffold: 242 Start: 518133 End: 523191 |
Description | glycosyltransferase family protein 47 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT64 | 522 | 756 | 0 |
FTMIAMTYEARLWNLQMYVKHYSRCASVREIVVVWNKGTPPDLEDFDSAVPVRIRVEPQNSLNNRFKPDELIKTKAVFELDDDIMITCDDVERGFKAWRE HPDRMVGYYPRLVDGTPLTYRNERYARSKKGYNMILTGAAFMDSEVAFQSYWSPEVEQARAVVDDLFNCEDILMNFILANQTAGRAVEYVHPAWAIDTSK LSSAAISRDTQGHYDKRTKCLKEFTRIFGGVPVRK |
Full Sequence |
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Protein Sequence Length: 769 Download |
MKSTLSPRAA AGGDWCDMSS KCKCRWRWSS YGLCSKCHDR LQHRGCGLSL AFLYFFWTTL 60 FFVFVGSLFA WLAFSPYKRH IGAAAGCQPD NEGSWSIGVY RGNSPFNLQP IESANIRNNQ 120 TAAWPVANPV FTCASVTDMS HPSNFVAYPF LFAHGAKMYM FFETKNSITM QGDIGVAEST 180 DQGVTWTYLG IALGEDWHVS YPYVFEYGDE IYMMPEGSQN GDLRLYRAVE FPLRWVFHKT 240 LISKPLVGAS MVKHEGEYWL FASNFHHFGN RKNGQLEIWF APSPLGPWVE HPQNPILNGD 300 SSIGARGGGT PFLHDGELYR IGQDCGETYG RRLRVFQVVT LTKEKYHEVE VPFNLDDSSK 360 KGQNAWNGHR THHMDLHQLS SGEWMAVIDG DRSPAGGVAS RYILGAGALL LLLSLNVTVG 420 ILFGYVSWVI PLLLMIPGKK AEPVLPWVIR PQFPTRFFRA ASRLSRSGSS LKRIRWRSCL 480 WCLFLLASLA VTVLATCTVV NCFFGGNGAE EPYPVDNQYS QFTMIAMTYE ARLWNLQMYV 540 KHYSRCASVR EIVVVWNKGT PPDLEDFDSA VPVRIRVEPQ NSLNNRFKPD ELIKTKAVFE 600 LDDDIMITCD DVERGFKAWR EHPDRMVGYY PRLVDGTPLT YRNERYARSK KGYNMILTGA 660 AFMDSEVAFQ SYWSPEVEQA RAVVDDLFNC EDILMNFILA NQTAGRAVEY VHPAWAIDTS 720 KLSSAAISRD TQGHYDKRTK CLKEFTRIFG GVPVRKWGFL SRKDGWDN* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd08999 | GH43_ABN_2 | 0.006 | 245 | 316 | 76 | + Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. | ||
cd08991 | GH43_bXyl_2 | 7.0e-5 | 147 | 309 | 165 | + Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. | ||
pfam09258 | Glyco_transf_64 | 2.0e-70 | 522 | 766 | 250 | + Glycosyl transferase family 64 domain. Members of this family catalyze the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analog of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate. |
Gene Ontology | |
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GO Term | Description |
GO:0016758 | transferase activity, transferring hexosyl groups |
GO:0031227 | intrinsic to endoplasmic reticulum membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001056178.1 | 0 | 84 | 768 | 61 | 744 | Os05g0540000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_001765032.1 | 0 | 37 | 768 | 2 | 738 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769705.1 | 0 | 33 | 768 | 1 | 741 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778644.1 | 0 | 18 | 768 | 1 | 751 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002532924.1 | 0 | 84 | 767 | 18 | 703 | transferase, transferring glycosyl groups, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1on8_B | 8e-24 | 514 | 766 | 22 | 284 | A Chain A, The Structure Of A Protein In Glycosyl Transferase Family 8 From Anaerococcus Prevotii. |
PDB | 1on8_A | 8e-24 | 514 | 766 | 22 | 284 | A Chain A, The Structure Of A Protein In Glycosyl Transferase Family 8 From Anaerococcus Prevotii. |
PDB | 1on6_B | 8e-24 | 514 | 766 | 22 | 284 | A Chain A, The Structure Of A Protein In Glycosyl Transferase Family 8 From Anaerococcus Prevotii. |
PDB | 1on6_A | 8e-24 | 514 | 766 | 22 | 284 | A Chain A, The Structure Of A Protein In Glycosyl Transferase Family 8 From Anaerococcus Prevotii. |
PDB | 1omz_B | 8e-24 | 514 | 766 | 22 | 284 | A Chain A, The Structure Of A Protein In Glycosyl Transferase Family 8 From Anaerococcus Prevotii. |