y
Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10030719m |
Family | GT64 |
Protein Properties | Length: 815 Molecular Weight: 91308.5 Isoelectric Point: 9.284 |
Chromosome | Chromosome/Scaffold: 4 Start: 7885509 End: 7891645 |
Description | glycosyltransferase family protein 47 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT64 | 568 | 799 | 0 |
FTMLTMTFDARLWNLKMYVKHYSRCSSVKEIVVVWNKGEPPKLSDLDSAVPVRIRVEKQNSLNNRFKLDPLIKTRGVLELDDDIMMTCDDIERGFQVWRQ HPDRIVGFYPRLVNGSPLRYRGEKYARRHKGYNMILTGAAFVDSQIAFNRYWSEQAKAGREFVDKFFNCEDVLLNYLYANASASKTVEYVRPAWAIDTSK FSGVAISRNTQVHYHKRSECLRKFAEMYGSFA |
Full Sequence |
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Protein Sequence Length: 815 Download |
MGSGQLNGNV NGNGNGNGGG GGGGGDGVTT TSGSSSNSNS SCYNNSWLCK WRWPQQQQQH 60 VAKNNNNNNN NNSLKGGGGA SFGGRRLVLS SSGYFFVVWC FVVYVFVGFL YGWLALKKPY 120 TVAAGLSSFG CQEDSEGSWS IGVFFGNSPF SLKPIETANV WRDDSAAWPV ANPIMTCASV 180 SSAGFPSNFV ADPFFYLQGN DLYLFYETKN SITMQGDIGV AKSVDKGATW QQLGIALDED 240 WHLSFPYVFD YHGQIYMMPE SRAKGEVRLY RAVNFPLEWK LEKIIMKKPL VDPFMINHDG 300 QYWLFGSDHS GFGTTQNGQL EIWYSSSPFG PWKPHKKNPI YNGDKSLGAR NGGRPFVYDG 360 NLYRVGQDCA ESYGRRVRTF KVEILTKNEY KELEVPFVFE ASNKGRNAWN GARYHHLDAQ 420 QLSSGEWIAV MDGDRALSGD SVQRYILGCA SVAAVGILVV LLGLLLGAVK CIIPLNWCAQ 480 YSGKRSDSLL TWERESMLCS KVRRFCSRLN RSASYLQGKI KPNTSIGRLV LAVIFVAGVA 540 LTCTGVKFIY GGNGADEAYM WKGHYSQFTM LTMTFDARLW NLKMYVKHYS RCSSVKEIVV 600 VWNKGEPPKL SDLDSAVPVR IRVEKQNSLN NRFKLDPLIK TRGVLELDDD IMMTCDDIER 660 GFQVWRQHPD RIVGFYPRLV NGSPLRYRGE KYARRHKGYN MILTGAAFVD SQIAFNRYWS 720 EQAKAGREFV DKFFNCEDVL LNYLYANASA SKTVEYVRPA WAIDTSKFSG VAISRNTQVH 780 YHKRSECLRK FAEMYGSFAG RKWEFGGRKD GWDL* 840 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd08999 | GH43_ABN_2 | 0.008 | 293 | 340 | 48 | + Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. | ||
cd08994 | GH43_like_2 | 0.003 | 294 | 378 | 87 | + Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. | ||
pfam09258 | Glyco_transf_64 | 5.0e-71 | 568 | 796 | 236 | + Glycosyl transferase family 64 domain. Members of this family catalyze the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analog of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate. |
Gene Ontology | |
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GO Term | Description |
GO:0016758 | transferase activity, transferring hexosyl groups |
GO:0031227 | intrinsic to endoplasmic reticulum membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAB85556.1 | 0 | 58 | 814 | 14 | 764 | putative protein [Arabidopsis thaliana] |
RefSeq | NP_196070.2 | 0 | 58 | 814 | 15 | 765 | glycosyltransferase family protein 47 [Arabidopsis thaliana] |
RefSeq | XP_002262646.1 | 0 | 126 | 814 | 68 | 756 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315348.1 | 0 | 118 | 814 | 85 | 847 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532924.1 | 0 | 125 | 814 | 15 | 704 | transferase, transferring glycosyl groups, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1on8_B | 2e-24 | 562 | 795 | 24 | 267 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |
PDB | 1on8_A | 2e-24 | 562 | 795 | 24 | 267 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |
PDB | 1on6_B | 2e-24 | 562 | 795 | 24 | 267 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |
PDB | 1on6_A | 2e-24 | 562 | 795 | 24 | 267 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |
PDB | 1omz_B | 2e-24 | 562 | 795 | 24 | 267 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |