y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.083560.1 |
Family | GT41 |
Protein Properties | Length: 926 Molecular Weight: 103249 Isoelectric Point: 6.0026 |
Chromosome | Chromosome/Scaffold: 00858 Start: 349415 End: 365851 |
Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT41 | 363 | 852 | 0 |
IKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAYNNLGVLHRDAGNIEMAVDAYERCLKIDPDSRNAGQNRLLAMNYTDEGHEDKLYEAHR DWGRRFMRLYPQYTSWDNPKDPERPLVIGYVSPDYFTHSVSYFVEAPLVHHDYANYKVVVYSAVVKADAKTIRFRDKVLKQGGVWRDIYGIDEKKVASMV REDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDALTDPPNTKQKHVEELVRLPECFLCYTPSPEAGSVSSAPALSNGFITF GSFNNLAKITPKVLEVWARILCAIPNSRLVVKCKPFCCDSVRQRFLSTLEQLGLESQRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMG VPCVTMAGSVHAHNVGVSLLSKVGLGHLVAKNEEEYVKLALQLASDVTALSNLRMSLRNLMSKSPVCDGPNFILGLESTYRKMWHRYCKG |
Full Sequence |
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Protein Sequence Length: 926 Download |
MERTEKDDSS GKEIVPVREN GFLQGSQSSS QSSSSLVSID SAEKKVEGKD GLFFANILRS 60 RNKFSDALVL YEKVLEKDGD NLEAHIGKGI CLQMQNMIKP AFESFAEAIR LDPQNACAFT 120 HCGILYKEEG RLVEAAESYQ KALRVDPSYR PAAECLAVVL TDLGTSLKLS GNSQDGIQKY 180 YEALKIDPHY APAYYNLGVV YSEMMQYDTA LNCYEKAAFE RPMYAEAYCN MGVIYKNRGD 240 LESAIACYER CLAVSPNFEI AKNNMAIALT DLGTKVKLEG DINQGVAYYK RALYYNWHYA 300 DAMYNLGVAY GEMLKFDTAI VFYELAFHFN PHCAEACNNL GVIYKDQDNL DKAVECYQLA 360 LSIKPNFSQS LNNLGVVYTV QGKMDAAASM IEKAILANPT YAEAYNNLGV LHRDAGNIEM 420 AVDAYERCLK IDPDSRNAGQ NRLLAMNYTD EGHEDKLYEA HRDWGRRFMR LYPQYTSWDN 480 PKDPERPLVI GYVSPDYFTH SVSYFVEAPL VHHDYANYKV VVYSAVVKAD AKTIRFRDKV 540 LKQGGVWRDI YGIDEKKVAS MVREDKVDIL VELTGHTANN KLGMMACRPA PVQVTWIGYP 600 NTTGLPTIDY RITDALTDPP NTKQKHVEEL VRLPECFLCY TPSPEAGSVS SAPALSNGFI 660 TFGSFNNLAK ITPKVLEVWA RILCAIPNSR LVVKCKPFCC DSVRQRFLST LEQLGLESQR 720 VDLLPLILLN HDHMQAYSLM DISLDTFPYA GTTTTCESLY MGVPCVTMAG SVHAHNVGVS 780 LLSKVGLGHL VAKNEEEYVK LALQLASDVT ALSNLRMSLR NLMSKSPVCD GPNFILGLES 840 TYRKMWHRYC KGDVPSLRRM EIVQQRELTE ETITTTDSNI TALKESPAST QSNGHCPVSL 900 DVLDRSPCGE NGDPLPPTKK PGKLN* 960 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR02917 | PEP_TPR_lipo | 1.0e-21 | 108 | 447 | 343 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
TIGR02917 | PEP_TPR_lipo | 6.0e-23 | 42 | 434 | 427 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
TIGR02917 | PEP_TPR_lipo | 1.0e-24 | 63 | 456 | 428 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
COG3914 | Spy | 1.0e-85 | 317 | 849 | 562 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] |
Gene Ontology | |
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GO Term | Description |
GO:0005515 | protein binding |
GO:0042802 | identical protein binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAX46402.1 | 0 | 1 | 912 | 1 | 915 | putative SPINDLY protein [Rosa luciae] |
RefSeq | XP_002281883.1 | 0 | 1 | 912 | 1 | 912 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002308458.1 | 0 | 1 | 925 | 1 | 934 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323412.1 | 0 | 1 | 906 | 1 | 913 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530535.1 | 0 | 1 | 906 | 1 | 910 | o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1w3b_B | 3e-38 | 108 | 409 | 59 | 380 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
PDB | 1w3b_B | 1e-31 | 110 | 441 | 27 | 344 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
PDB | 1w3b_B | 2e-29 | 54 | 375 | 73 | 380 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
PDB | 1w3b_B | 1e-19 | 54 | 313 | 141 | 386 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
PDB | 1w3b_B | 0.0000000000001 | 54 | 240 | 209 | 388 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY295408 | 401 | 430 | 827 | 0 |
GO867600 | 328 | 321 | 648 | 0 |
HO781209 | 361 | 493 | 853 | 0 |
GO867600 | 142 | 139 | 278 | 0.00000000000005 |
GO867600 | 136 | 57 | 190 | 0.005 |
Sequence Alignments (This image is cropped. Click for full image.) |
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