y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra009728 |
Family | AA2 |
Protein Properties | Length: 342 Molecular Weight: 37356.6 Isoelectric Point: 8.3035 |
Chromosome | Chromosome/Scaffold: 06 Start: 16877741 End: 16879467 |
Description | Peroxidase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA2 | 61 | 318 | 0 |
FYKNDTSIAPKLLRLLYSDCMVNGCDASVLLQGPNSERTAPQNRGLGGFVIIDKIKQVLESRCPGVVSCADILNLATRDAVHMAGAPSYPVFTGRRDGGA LTADAVDLPSPSISVEESLSYFNSKGLDVLDMTTLLGAHSMGKTHCSHIVNRLYNFKNTGKPDPTMNTTLVSQLQYLCPPRTQKGQTDPLVYLNPDSGSS NRFSSSYYSRVLSHNAVLGVDQQLLYNEDSKEITQEFAAGFEDFRKSFALAMSRMGSI |
Full Sequence |
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Protein Sequence Length: 342 Download |
MRQCMKFFPL LALLVVSLTG TATVKAATGL NPPVKLVWHY YKVTNTCDDA EAYIRHQVEK 60 FYKNDTSIAP KLLRLLYSDC MVNGCDASVL LQGPNSERTA PQNRGLGGFV IIDKIKQVLE 120 SRCPGVVSCA DILNLATRDA VHMAGAPSYP VFTGRRDGGA LTADAVDLPS PSISVEESLS 180 YFNSKGLDVL DMTTLLGAHS MGKTHCSHIV NRLYNFKNTG KPDPTMNTTL VSQLQYLCPP 240 RTQKGQTDPL VYLNPDSGSS NRFSSSYYSR VLSHNAVLGV DQQLLYNEDS KEITQEFAAG 300 FEDFRKSFAL AMSRMGSINV LTGKAGEIRR DCRVTNANYG A* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00692 | ligninase | 9.0e-7 | 83 | 200 | 123 | + Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites. | ||
cd00314 | plant_peroxidase_like | 8.0e-19 | 54 | 317 | 281 | + Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised of classic extracellular plant peroxidases, like horseradish peroxidase. | ||
pfam00141 | peroxidase | 1.0e-58 | 54 | 200 | 149 | + Peroxidase. | ||
PLN03030 | PLN03030 | 1.0e-72 | 5 | 336 | 339 | + cationic peroxidase; Provisional | ||
cd00693 | secretory_peroxidase | 4.0e-131 | 35 | 335 | 305 | + Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. |
Gene Ontology | |
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GO Term | Description |
GO:0004601 | peroxidase activity |
GO:0006979 | response to oxidative stress |
GO:0020037 | heme binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PIR | 0 | 35 | 336 | 24 | 325 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
GenBank | AAL84934.1 | 0 | 35 | 336 | 34 | 335 | At2g43480/T1O24.22 [Arabidopsis thaliana] |
RefSeq | NP_181876.2 | 0 | 35 | 336 | 34 | 335 | peroxidase, putative [Arabidopsis thaliana] |
RefSeq | NP_197795.1 | 0 | 3 | 341 | 2 | 340 | peroxidase family protein [Arabidopsis thaliana] |
RefSeq | XP_002272039.1 | 0 | 2 | 336 | 3 | 339 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1qo4_A | 0 | 34 | 337 | 1 | 305 | A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex With L- Aspartate |
PDB | 1pa2_A | 0 | 34 | 337 | 1 | 305 | A Chain A, Arabidopsis Thaliana Peroxidase A2 |
PDB | 1qgj_B | 0 | 46 | 336 | 10 | 299 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 1qgj_A | 0 | 46 | 336 | 10 | 299 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 4a5g_B | 0 | 46 | 337 | 12 | 306 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
betanidin degradation | RXN-8635 | EC-1.11.1.7 | peroxidase |