CAZyme Information: evm.model.AC2VRR_s00225g47-p1

Basic Information

• Species: Albugo candida
• Lineage: Oomycota; NA; ; Albuginaceae; Albugo; Albugo candida
• CAZyme ID: evm.model.AC2VRR_s00225g47-p1
• CAZy Family: GT2|GT2
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
401		46778.87	6.2887

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_Acandida2VRR	15896	911350	72	15824

• Gene Location: location=Acan2VRR_SC225:88740-89997(-)

Full Sequence      

MSSVEWKRMCFICPPTYVCVRRQLLDTKSHTNTNTKYTPLHLDGRLDKDEWAHVEWSTLF
QDIEGPKMLPKPHPQTRFKMMYDDTYLYIGAELAETQLWGTYTVKNSRMYDENDFEIFLN
PDGTRHNYYELEMNCLNTIWELVLQKPYKDGHALENPCNLHSTESAVYLHGDVNNPAAKS
TKWSIEVRYALKELERFDTVRNRPMRAGDIWRVNFSRVQYKLETVKNQAGVLSYEKKPNC
REDNIVWAPTGVIDIHRPEKWGIVFFASDTSHATGVLELKDAQKRYLDQQLAIERVLDTI
YYAQCDFCAKNAKYAESFEELQTFIEANSDSEKTLQYPIDLYSKLQDDFKRFAPKITVGD
TVAPLSKKVERLGNTYCATISTATEEWSIRHDGKLWPTYSS

Enzyme Prediction     

No EC number prediction in evm.model.AC2VRR_s00225g47-p1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
CBM9	43	222	1.6e-32	0.8296703296703297

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
187678	CBM9_like_3	1.07e-57	42	262	1	199	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily may co-occur with various other domains.
187676	CBM9_like_2	6.68e-12	38	218	9	170	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized subfamily are typically found at the N-terminus of longer proteins that lack additional annotation with domain footprints.
187675	DOMON_like	5.88e-07	57	217	1	148	Domon-like ligand-binding domains. DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases.
187677	CBM9_like_4	2.70e-06	42	129	4	89	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other domains.
399451	CBM9_1	6.25e-06	42	133	1	86	Carbohydrate family 9 binding domain-like. CBM9_1 is a C-terminal domain on bacterial xylanase proteins, and it is tandemly repeated in a number of family-members. The CBM9 module binds to amorphous and crystalline cellulose and a range of soluble di- and monosaccharides as well as to cello- and xylo- oligomers of different degrees of polymerization. Comparison of the glucose and cellobiose complexes during crystallisation reveals surprising differences in binding of these two substrates by CBM9-2. Cellobiose was found to bind in a distinct orientation from glucose, while still maintaining optimal stacking and electrostatic interactions with the reducing end sugar.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UOK64684.1|CBM0	1.27e-68	14	321	15	297
QZN78207.1|CBM9	2.52e-68	30	321	17	297
QOT09656.1|CBM0	3.17e-66	39	321	26	298
QLG42346.1|CBM0	8.61e-66	39	321	26	297
QYR24058.1|CBM0	1.97e-65	39	266	26	252

PDB Hits     

evm.model.AC2VRR_s00225g47-p1 has no PDB hit.

Swiss-Prot Hits     

evm.model.AC2VRR_s00225g47-p1 has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000029	0.000000

TMHMM  Annotations     

There is no transmembrane helices in evm.model.AC2VRR_s00225g47-p1.