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CAZyme Information: evm.model.AC2VRR_s00060g162-p1

You are here: Home > Sequence: evm.model.AC2VRR_s00060g162-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Albugo candida
Lineage Oomycota; NA; ; Albuginaceae; Albugo; Albugo candida
CAZyme ID evm.model.AC2VRR_s00060g162-p1
CAZy Family GH28
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
371 40022.46 4.9566
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Acandida2VRR 15896 911350 72 15824
Gene Location Start: 332094; End:333209  Strand: +

Full Sequence      Download help

MSASEAFAIQ  SKPIISASIH  RVLSIILWSA  IPTINGHGHL  VYKTEKGYDP  LCVFKAGVDT60
TAYSAIVNGT  RMCPGYELST  GPETNVANYD  KCMKAKYKYA  TLAEFIRKNQ  VVEPGATPID120
GYTLPDQMAS  VVINKTLIFG  NDLGHHGPCS  VMCDEKEVVY  ELNCHFKFTG  KPAVIPIDFD180
TCSKAKKVWF  YWVAMHGAGW  QVYTNAFPVK  SSSSGNKEST  EGSNEYSDPT  KTNVNEGTQL240
DTKNDATPNP  DTKPAPETTP  PSETKPAPET  TPPSETKPAP  ETTSPPETTP  PPETTTKPET300
ATKPETTTKP  DTAAKLEEET  TSKGAGEVYP  AGDKGNEEES  TTDNSGGSDS  TEKNTNQQET360
ASQKSKCTLR  T371

Enzyme Prediction      help

No EC number prediction in evm.model.AC2VRR_s00060g162-p1.

CAZyme Signature Domains help

Created with Snap18375574921111291481661852042222412592782963153333525232AA17
Family Start End Evalue family coverage
AA17 27 281 9.7e-36 0.926530612244898

CDD Domains      download full data without filtering help

Created with Snap1837557492111129148166185204222241259278296315333352248362MSCRAMM_ClfB228365MSCRAMM_ClfB247368PspC_subgroup_2247331PHA03291245363MSCRAMM_ClfB
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
411414 MSCRAMM_ClfB 2.82e-04 248 362 554 668
MSCRAMM family adhesin clumping factor ClfB. Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
411414 MSCRAMM_ClfB 4.87e-04 228 365 545 677
MSCRAMM family adhesin clumping factor ClfB. Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
411408 PspC_subgroup_2 0.003 247 368 393 515
pneumococcal surface protein PspC, LPXTG-anchored form. The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
223033 PHA03291 0.009 247 331 209 295
envelope glycoprotein I; Provisional
411414 MSCRAMM_ClfB 0.010 245 363 538 657
MSCRAMM family adhesin clumping factor ClfB. Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.

CAZyme Hits      help

Created with Snap183755749211112914816618520422224125927829631533335272371CCI46093.1|AA1721209CCA20830.1|AA1723204EGZ08731.1|AA1715215ETL88399.1|AA1715215ETI41730.1|AA17
Hit ID E-Value Query Start Query End Hit Start Hit End
CCI46093.1|AA17 1.45e-161 72 371 1 300
CCA20830.1|AA17 1.79e-73 21 209 20 207
EGZ08731.1|AA17 1.12e-25 23 204 8 195
ETL88399.1|AA17 2.92e-25 15 215 3 209
ETI41730.1|AA17 2.92e-25 15 215 3 209

PDB Hits      help

evm.model.AC2VRR_s00060g162-p1 has no PDB hit.

Swiss-Prot Hits      help

evm.model.AC2VRR_s00060g162-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.060097 0.939869 CS pos: 36-37. Pr: 0.8653

TMHMM  Annotations      help

There is no transmembrane helices in evm.model.AC2VRR_s00060g162-p1.