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CAZyme Information: VBB84423.1

You are here: Home > Sequence: VBB84423.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Podospora comata
Lineage Ascomycota; Sordariomycetes; ; Podosporaceae; Podospora; Podospora comata
CAZyme ID VBB84423.1
CAZy Family GH93
CAZyme Description Putative Glycoside Hydrolase Family 27
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
403 43947.77 8.5174
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcomataTmat 13100 N/A 2652 10448
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in VBB84423.1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH27 125 378 4.9e-57 0.9737991266375546

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
269893 GH27 1.71e-111 29 307 1 271
glycosyl hydrolase family 27 (GH27). GH27 enzymes occur in eukaryotes, prokaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-N-acetylgalactosaminidase, and 3-alpha-isomalto-dextranase. All GH27 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. GH27 members are retaining enzymes that cleave their substrates via an acid/base-catalyzed, double-displacement mechanism involving a covalent glycosyl-enzyme intermediate. Two aspartic acid residues have been identified as the catalytic nucleophile and the acid/base, respectively.
177874 PLN02229 4.30e-86 21 394 55 411
alpha-galactosidase
166449 PLN02808 1.15e-84 21 380 24 361
alpha-galactosidase
178295 PLN02692 2.77e-80 21 382 48 387
alpha-galactosidase
374582 Melibiase_2 1.14e-64 29 307 2 284
Alpha galactosidase A.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.00e-314 1 403 1 403
1.51e-309 1 403 1 421
1.51e-309 1 403 1 421
2.35e-242 1 402 1 401
2.35e-242 1 402 1 401

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.04e-76 19 402 1 412
Chain A, alpha-galactosidase [Trichoderma reesei],1T0O_A Chain A, alpha-galactosidase [Trichoderma reesei]
6.45e-73 22 339 2 296
Chain A, alpha-galactosidase [Oryza sativa]
2.10e-70 22 401 2 391
Crystal structure of alpha-galactosidase I from Mortierella vinacea [Umbelopsis vinacea]
4.52e-70 21 397 1 357
Nicotiana benthamiana alpha-galactosidase [Nicotiana benthamiana]
7.44e-68 23 350 24 364
Chain A, Alpha-galactosidase 1 [Saccharomyces cerevisiae],3LRL_A Chain A, Alpha-galactosidase 1 [Saccharomyces cerevisiae]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.53e-87 6 400 10 431
Probable alpha-galactosidase B OS=Penicillium simplicissimum OX=69488 GN=agl1 PE=2 SV=1
3.83e-82 23 400 29 448
Probable alpha-galactosidase B OS=Talaromyces emersonii OX=68825 PE=3 SV=1
3.31e-81 8 364 11 392
Probable alpha-galactosidase B OS=Aspergillus niger OX=5061 GN=aglB PE=2 SV=1
2.11e-80 6 364 12 398
Probable alpha-galactosidase B OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=aglB PE=3 SV=1
2.60e-80 8 364 11 392
Probable alpha-galactosidase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=aglB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.999257 0.000792

TMHMM  Annotations      help

There is no transmembrane helices in VBB84423.1.