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CAZyme Information: VBB84300.1

You are here: Home > Sequence: VBB84300.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Podospora comata
Lineage Ascomycota; Sordariomycetes; ; Podosporaceae; Podospora; Podospora comata
CAZyme ID VBB84300.1
CAZy Family GH79
CAZyme Description Putative Glycoside Hydrolase Family 11
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
253 27944.63 9.1737
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcomataTmat 13100 N/A 2652 10448
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.8:18

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH11 55 230 1.4e-69 0.9830508474576272

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395367 Glyco_hydro_11 5.37e-99 54 228 1 174
Glycosyl hydrolases family 11.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.63e-189 1 253 1 253
7.54e-189 1 253 1 253
7.54e-189 1 253 1 253
7.16e-125 12 250 9 250
5.66e-124 12 246 9 246

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.10e-84 49 232 5 188
Chain A, Endo-1,4-beta-xylanase 2 [Trichoderma reesei],4XQD_B Chain B, Endo-1,4-beta-xylanase 2 [Trichoderma reesei],5ZF3_A Crystal Structures of Endo-beta-1,4-xylanase II Complexed with Xylotriose [Trichoderma reesei RUT C-30],5ZH0_A Crystal Structures of Endo-beta-1,4-xylanase II [Trichoderma reesei RUT C-30],5ZO0_A Neutron structure of xylanase at pD5.4 [Trichoderma reesei RUT C-30]
6.31e-84 49 232 6 189
High resolution structure of xylanase-II from one micron beam experiment [Trichoderma longibrachiatum]
6.31e-84 49 232 6 189
Chain A, Endo-1,4-beta-xylanase 2 [Trichoderma reesei]
6.31e-84 49 232 6 189
Chain A, ENDO-1,4-BETA-XYLANASE II [Trichoderma reesei],1ENX_B Chain B, ENDO-1,4-BETA-XYLANASE II [Trichoderma reesei],1RED_A Chain A, ENDO-1,4-BETA-XYLANASE II [Trichoderma reesei],1RED_B Chain B, ENDO-1,4-BETA-XYLANASE II [Trichoderma reesei],1REE_A Chain A, ENDO-1,4-BETA-XYLANASE II [Trichoderma reesei],1REE_B Chain B, ENDO-1,4-BETA-XYLANASE II [Trichoderma reesei],1REF_A Chain A, ENDO-1,4-BETA-XYLANASE II [Trichoderma reesei],1REF_B Chain B, ENDO-1,4-BETA-XYLANASE II [Trichoderma reesei],1XYO_A Chain A, ENDO-1,4-BETA-XYLANASE II [Trichoderma reesei],1XYO_B Chain B, ENDO-1,4-BETA-XYLANASE II [Trichoderma reesei],1XYP_A Chain A, ENDO-1,4-BETA-XYLANASE II [Trichoderma reesei],1XYP_B Chain B, ENDO-1,4-BETA-XYLANASE II [Trichoderma reesei],2DFB_A Chain A, Endo-1,4-beta-xylanase 2 [Trichoderma reesei],2DFC_A Chain A, Endo-1,4-beta-xylanase 2 [Trichoderma reesei],3AKP_A Crystal structure of xylanase from Trichoderma longibrachiatum [Trichoderma longibrachiatum],3AKP_B Crystal structure of xylanase from Trichoderma longibrachiatum [Trichoderma longibrachiatum],3AKQ_A Crystal structure of xylanase from Trichoderma longibrachiatum [Trichoderma longibrachiatum],3AKR_A Crystal structure of xylanase from Trichoderma longibrachiatum [Trichoderma longibrachiatum],3AKS_A Crystal structure of xylanase from Trichoderma longibrachiatum [Trichoderma longibrachiatum],3AKT_A Crystal structure of xylanase from Trichoderma longibrachiatum [Trichoderma longibrachiatum],3AKT_B Crystal structure of xylanase from Trichoderma longibrachiatum [Trichoderma longibrachiatum],3LGR_A Chain A, Endo-1,4-beta-xylanase 2 [Trichoderma reesei],4HKW_A Chain A, Endo-1,4-beta-xylanase 2 [Trichoderma reesei],4S2D_A Chain A, Endo-1,4-beta-xylanase 2 [Trichoderma reesei],4S2F_A Chain A, Endo-1,4-beta-xylanase 2 [Trichoderma reesei],4S2G_A Chain A, Endo-1,4-beta-xylanase 2 [Trichoderma reesei],4S2H_A Chain A, Endo-1,4-beta-xylanase 2 [Trichoderma reesei],7MGU_A Chain A, Endo-1,4-beta-xylanase [Trichoderma reesei]
1.74e-83 49 232 5 188
Chain A, Endo-1,4-beta-xylanase 2 [Trichoderma reesei],4HKO_A Chain A, Endo-1,4-beta-xylanase 2 [Trichoderma reesei]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
9.77e-83 49 232 39 222
Endo-1,4-beta-xylanase 2 OS=Hypocrea jecorina (strain QM6a) OX=431241 GN=xyn2 PE=1 SV=1
9.77e-83 49 232 39 222
Endo-1,4-beta-xylanase 2 OS=Hypocrea jecorina (strain ATCC 56765 / BCRC 32924 / NRRL 11460 / Rut C-30) OX=1344414 GN=xyn2 PE=1 SV=2
2.44e-80 49 232 37 220
Endo-1,4-beta-xylanase 2 OS=Trichoderma harzianum OX=5544 GN=Xyn2 PE=1 SV=1
7.10e-80 49 232 6 189
Endo-1,4-beta-xylanase OS=Trichoderma harzianum OX=5544 PE=1 SV=1
9.68e-80 11 232 13 230
Probable endo-1,4-beta-xylanase A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=xlnA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000292 0.999698 CS pos: 17-18. Pr: 0.9432

TMHMM  Annotations      help

There is no transmembrane helices in VBB84300.1.