CAZyme Information: VBB83543.1

Basic Information

• Species: Podospora comata
• Lineage: Ascomycota; Sordariomycetes; ; Podosporaceae; Podospora; Podospora comata
• CAZyme ID: VBB83543.1
• CAZy Family: GH71|CBM24|CBM24
• CAZyme Description: Putative Cellobiose dehydrogenase precursor

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
493	LR026969|CGC5	52751.39	7.2710

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PcomataTmat	13100	N/A	2652	10448

• Gene Location: location=LR026969:80487-82269(+)

Full Sequence      

MKPAWLQGTNLTRFDVPGLCNQIWADPTGVSCTDIDQMAGCVLGGGTAVNAGLWWKPHPE
DWDTNFPAGWQTKDLAAATDRVFSRIPGTITPSVDGKRYLSQGFDVLGGSLRAAGWEYVV
PNETPEKKNRTIGHSTFMFSGGERGGPLATYLVTASGRNTFTLWTNTIAKRIIRTGGHAT
GVEVECNRGGHAGVVNLTPNTGRVISAAGAFGSAKLLFRSGIGPTDQLNIVKNSTDGPTM
IDSAQWINLPVGYNLNDHVGTDIEIAHPDVVFYDYYAAWRSPIASDAETYLANRTGPFAQ
AAPNIGPIFWEIIKGGDGTDRHLHWQARVEGLTNTSMTITQYLGTGSTSRGRMTITRQLN
TVVSTPPYLRTEHDKQAVVEGLISLQKSLANVANLTWITPRPGVSAEQFVNSIPAIPGRR
GSNHWIGTAKMGTDDGRSGGTSVVDLNTKVYGTDNIFVVDASIFPGMITANPSAAIVIVS
EHAATKILALSSA

Enzyme Prediction     

EC	1.1.99.18:13

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
AA3	1	490	3.1e-208	0.8905109489051095

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
225186	BetA	1.97e-40	42	493	86	539	Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
398739	GMC_oxred_C	1.41e-23	348	483	2	143	GMC oxidoreductase. This domain found associated with pfam00732.
235000	PRK02106	3.14e-23	151	488	206	532	choline dehydrogenase; Validated
366272	GMC_oxred_N	1.57e-18	39	258	23	216	GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
215420	PLN02785	0.001	42	229	130	307	Protein HOTHEAD

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
VBB83543.1|AA3_1	0.0	1	493	1	493
CDP30346.1|AA3_1	0.0	1	493	49	547
CAP67480.1|AA3_1	0.0	1	493	49	547
AEO71029.1|AA3_1	7.55e-303	1	490	78	567
AEO61303.1|AA3_1	2.67e-243	1	490	79	516

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
4QI4_A	3.22e-219	3	490	52	545	Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides],4QI5_A Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
4QI7_A	1.39e-218	1	489	272	765	Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A],4QI7_B Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A]
4QI6_A	5.34e-216	3	490	274	767	Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
1NAA_A	1.67e-106	5	491	49	538	Chain A, Cellobiose dehydrogenase [Phanerodontia chrysosporium],1NAA_B Chain B, Cellobiose dehydrogenase [Phanerodontia chrysosporium]
1KDG_A	1.92e-106	5	491	54	543	Chain A, cellobiose dehydrogenase [Phanerodontia chrysosporium],1KDG_B Chain B, cellobiose dehydrogenase [Phanerodontia chrysosporium]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q01738|CDH_PHACH	3.34e-103	5	491	281	770	Cellobiose dehydrogenase OS=Phanerodontia chrysosporium OX=2822231 GN=CDH-1 PE=1 SV=1
sp|Q47944|SDH_GLUOY	3.47e-19	35	484	76	524	L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans OX=442 PE=3 SV=1
sp|Q9HTJ2|BETA_PSEAE	3.74e-10	142	487	197	533	Oxygen-dependent choline dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=betA PE=3 SV=1
sp|B7V5R3|BETA_PSEA8	3.74e-10	142	487	197	533	Oxygen-dependent choline dehydrogenase OS=Pseudomonas aeruginosa (strain LESB58) OX=557722 GN=betA PE=3 SV=1
sp|Q02DZ0|BETA_PSEAB	6.55e-10	142	487	197	533	Oxygen-dependent choline dehydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=betA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000045	0.000003

TMHMM  Annotations     

There is no transmembrane helices in VBB83543.1.