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CAZyme Information: VBB81166.1

You are here: Home > Sequence: VBB81166.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Podospora comata
Lineage Ascomycota; Sordariomycetes; ; Podosporaceae; Podospora; Podospora comata
CAZyme ID VBB81166.1
CAZy Family GH43|CBM91
CAZyme Description Putative GMC oxidoreductase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
624 67535.71 4.8423
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcomataTmat 13100 N/A 2652 10448
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in VBB81166.1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 23 619 3e-75 0.5194174757281553

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
235000 PRK02106 7.99e-55 275 610 204 531
choline dehydrogenase; Validated
225186 BetA 5.17e-53 42 611 22 534
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
398739 GMC_oxred_C 1.47e-30 460 606 1 143
GMC oxidoreductase. This domain found associated with pfam00732.
215420 PLN02785 2.00e-22 262 602 215 568
Protein HOTHEAD
366272 GMC_oxred_N 2.59e-10 266 394 126 218
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 624 1 624
0.0 1 624 1 624
0.0 1 624 1 624
2.40e-228 17 613 68 661
1.16e-187 26 613 27 615

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.15e-40 27 617 13 533
Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_B Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_C Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_D Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_E Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_F Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_G Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_H Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis]
4.15e-40 27 617 13 533
Chain A, Choline oxidase [Arthrobacter globiformis],3LJP_B Chain B, Choline oxidase [Arthrobacter globiformis]
1.05e-39 27 617 13 533
Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],2JBV_B Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],4MJW_A Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis],4MJW_B Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis]
2.37e-25 27 607 7 557
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
2.37e-25 27 607 7 557
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.40e-39 27 617 13 533
Choline oxidase OS=Arthrobacter globiformis OX=1665 GN=codA PE=1 SV=1
4.52e-35 27 607 64 601
Glucose dehydrogenase [FAD, quinone] OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=Gld PE=3 SV=4
3.90e-34 27 610 42 573
Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1
1.25e-33 27 610 6 535
Oxygen-dependent choline dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) OX=391008 GN=betA PE=3 SV=1
1.36e-33 23 610 2 535
Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=betA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000317 0.999665 CS pos: 19-20. Pr: 0.9846

TMHMM  Annotations      help

There is no transmembrane helices in VBB81166.1.