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CAZyme Information: VBB80495.1

You are here: Home > Sequence: VBB80495.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Podospora comata
Lineage Ascomycota; Sordariomycetes; ; Podosporaceae; Podospora; Podospora comata
CAZyme ID VBB80495.1
CAZy Family GH18|GH18
CAZyme Description Putative GMC oxidoreductase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
676 LR026967|CGC13 74159.78 7.1830
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PcomataTmat 13100 N/A 2652 10448
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in VBB80495.1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 62 670 1.2e-135 0.9947183098591549

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
235000 PRK02106 2.02e-69 61 669 4 532
choline dehydrogenase; Validated
225186 BetA 5.00e-68 64 675 9 540
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
366272 GMC_oxred_N 1.04e-28 127 352 10 217
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
398739 GMC_oxred_C 3.07e-27 466 664 1 143
GMC oxidoreductase. This domain found associated with pfam00732.
215420 PLN02785 2.03e-23 17 671 9 579
Protein HOTHEAD

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 676 1 676
0.0 1 676 1 676
1.00e-161 50 670 8 613
1.54e-137 59 670 1331 1912
2.40e-116 49 668 8 652

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.80e-37 61 672 6 564
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
8.11e-37 61 672 6 564
Chain A, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
8.11e-37 61 672 6 564
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
8.11e-37 61 672 6 564
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
8.81e-37 61 672 82 640
Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.38e-43 59 668 32 611
Dehydrogenase str4 OS=Strobilurus tenacellus OX=41251 GN=str4 PE=1 SV=1
1.73e-41 61 668 5 535
Oxygen-dependent choline dehydrogenase 1 OS=Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) OX=290398 GN=betA1 PE=3 SV=1
5.76e-41 62 668 6 533
Oxygen-dependent choline dehydrogenase OS=Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) OX=290398 GN=betA PE=3 SV=1
1.84e-40 64 668 6 527
L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans OX=442 PE=3 SV=1
6.81e-40 62 668 2 529
Oxygen-dependent choline dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) OX=561230 GN=betA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.999097 0.000925

TMHMM  Annotations      help

There is no transmembrane helices in VBB80495.1.