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CAZyme Information: TSTA_116120-t26_1-p1

You are here: Home > Sequence: TSTA_116120-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Talaromyces stipitatus
Lineage Ascomycota; Eurotiomycetes; ; Trichocomaceae; Talaromyces; Talaromyces stipitatus
CAZyme ID TSTA_116120-t26_1-p1
CAZy Family GT2
CAZyme Description choline dehydrogenase, putative
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
667 72283.42 4.6992
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_TstipitatusATCC10500 12629 441959 146 12483
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in TSTA_116120-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 34 660 4.7e-93 0.9947183098591549

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
225186 BetA 4.78e-70 34 665 7 540
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000 PRK02106 4.16e-68 34 658 5 531
choline dehydrogenase; Validated
398739 GMC_oxred_C 2.01e-29 513 654 5 143
GMC oxidoreductase. This domain found associated with pfam00732.
215420 PLN02785 1.84e-20 35 640 56 558
Protein HOTHEAD
366272 GMC_oxred_N 1.55e-14 135 408 19 218
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 19 659 23 674
0.0 19 659 23 674
0.0 19 659 23 674
0.0 34 659 29 655
6.71e-315 21 665 33 676

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.31e-39 32 658 5 560
Chain A, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
2.41e-39 34 658 7 560
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
2.41e-39 34 658 7 560
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
2.41e-39 34 658 7 560
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
2.83e-39 34 658 83 636
Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
9.38e-47 35 658 41 607
Dehydrogenase pkfF OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pkfF PE=2 SV=1
4.79e-44 32 658 2 533
Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=betA PE=3 SV=1
5.00e-44 33 659 1 526
Oxygen-dependent choline dehydrogenase OS=Brucella anthropi (strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 3331 / NBRC 15819 / NCTC 12168 / Alc 37) OX=439375 GN=betA PE=3 SV=1
4.44e-43 33 659 1 526
Oxygen-dependent choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) OX=483179 GN=betA PE=3 SV=1
4.44e-43 33 659 1 526
Oxygen-dependent choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=betA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
0.624340 0.375666

TMHMM  Annotations      help

There is no transmembrane helices in TSTA_116120-t26_1-p1.