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CAZyme Information: TSTA_043550-t26_1-p1

You are here: Home > Sequence: TSTA_043550-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Talaromyces stipitatus
Lineage Ascomycota; Eurotiomycetes; ; Trichocomaceae; Talaromyces; Talaromyces stipitatus
CAZyme ID TSTA_043550-t26_1-p1
CAZy Family GH13
CAZyme Description extracellular polygalacturonase, putative
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
375 37932.94 5.2859
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_TstipitatusATCC10500 12629 441959 146 12483
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.15:80

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 52 370 5.9e-78 0.9753846153846154

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 1.07e-145 56 375 1 321
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
177865 PLN02218 1.24e-26 106 368 156 417
polygalacturonase ADPG
215540 PLN03010 4.69e-26 96 374 124 394
polygalacturonase
178580 PLN03003 4.21e-24 108 307 115 304
Probable polygalacturonase At3g15720
227721 Pgu1 1.05e-23 92 302 183 408
Polygalacturonase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.15e-219 1 375 1 375
4.51e-181 37 375 102 440
1.25e-180 10 375 11 380
1.79e-179 14 375 15 376
1.79e-179 14 375 15 376

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.57e-180 27 375 1 344
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
2.64e-179 27 375 1 344
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
9.30e-178 36 375 1 336
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
7.95e-168 36 373 1 335
Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_B Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_C Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_D Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_E Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_F Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_G Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini]
1.01e-163 35 375 1 339
Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.18e-180 14 375 15 376
Polygalacturonase OS=Penicillium griseoroseum OX=84562 GN=PGG1 PE=3 SV=1
1.49e-179 17 375 18 380
Polygalacturonase 2 OS=Penicillium olsonii OX=99116 GN=PG2 PE=3 SV=1
1.20e-171 13 375 14 380
Endo-polygalacturonase OS=Sclerotinia sclerotiorum OX=5180 GN=PG1 PE=3 SV=1
1.64e-166 7 375 8 378
Endopolygalacturonase I OS=Aspergillus aculeatus OX=5053 GN=pgaI PE=1 SV=1
2.53e-163 1 375 1 368
Probable endopolygalacturonase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=pgaA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000211 0.999783 CS pos: 34-35. Pr: 0.3087

TMHMM  Annotations      help

There is no transmembrane helices in TSTA_043550-t26_1-p1.